PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004485466.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family TCP
Protein Properties Length: 520aa    MW: 54763.2 Da    PI: 7.0829
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004485466.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1325.6e-411162403115
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 
                     + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+s+ s++        
  XP_004485466.1 116 PPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSAPpsksaphs 210
                     5699****************************************************************999888888888886666666666777 PP

             TCP  89 .............kaaksaa.kskksqksaasalnlakesr 115
                                  +aa ++a             l ++++++
  XP_004485466.1 211 fhgalaltrhpyeEAAYQHApL-----------LGFHQHHQ 240
                     7776555555554222222212...........22222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-39120245IPR005333Transcription factor, TCP
PROSITE profilePS5136928.496121175IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MELSDLQNNK QKRGTHQQQQ QESSSSPSNS HSHSHSHSHQ QHLVVPFDGR PPPFIMGSIS  60
IQQPSSNSSS SSSSNSSSSA IDASLAIATR SEPPLLNNTN NQLSSSSPAV TTVANPPKRS  120
TKDRHTKVDG RGRRIRMPAT CAARVFQLTR ELGHKSDGET IEWLLQQAEP AIIAATGTGT  180
IPANFSTLNV SLRSSGSTLS APPSKSAPHS FHGALALTRH PYEEAAYQHA PLLGFHQHHQ  240
QLMSADQIGE ALNPNENYMR KRYREDLFKD DNNNNESGGD GSSSSPKAFK TNHQQQDTMG  300
EGEGGGGGGG GGGSGASSSS SSNSSISGLL RPSNMIPATA MWATAGSGNT IWMVPVSGGG  360
GGAATSNSET QTQNMWPFGP SPSQNSQTQG NNAGTPSPLH FMPRFNLPVS GGGGGGGVEF  420
QGGRGGLQLG SVYQPSQHIG LAVSDSNLGM LAALNAYTRA AAGATDFNVN VNSDNHHHHH  480
HQHQHQHHSI SLDSQSHSHS HSHSHPQPTE SEEDAPDTSQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004485466.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004485466.10.0transcription factor TCP8
TrEMBLA0A1S2X9A30.0A0A1S2X9A3_CICAR; transcription factor TCP8
STRINGXP_004485466.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.12e-62TCP family protein