PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NP_001266054.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NAC
Protein Properties Length: 191aa    MW: 21971.6 Da    PI: 4.4593
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NP_001266054.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.67.8e-3091241128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGf F+Ptdeelv ++L  k+++ + +  ++i+++++ +++Pw+L  k+ ++ +e y F++ ++        +r+ ++gyWk+ g +k+++s+
  NP_001266054.1   9 LPPGFYFSPTDEELVLHFLYSKASNLPYHP-NIIPHLHLSHIDPWELYGKALSSGNEHYLFTEVKE--------SRSNENGYWKEIGATKAIVSA 94 
                     79*************************988.89**************97777788999***98755........566679*************** PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++  g+kk Lvf     ++g++t+W+m+ey++
  NP_001266054.1  95 ANNILGMKKYLVFT---LREGTQTNWIMEEYHI 124
                     *************8...68899*********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-395148IPR003441NAC domain
PROSITE profilePS5100536.7379148IPR003441NAC domain
PfamPF023655.8E-2010124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MLGSENMKLP PGFYFSPTDE ELVLHFLYSK ASNLPYHPNI IPHLHLSHID PWELYGKALS  60
SGNEHYLFTE VKESRSNENG YWKEIGATKA IVSAANNILG MKKYLVFTLR EGTQTNWIME  120
EYHISSSTSP INLEESWSKW VLCKVYEKKM SQMSQQVCYS DEDVDSGTEV SWLDEVFMSL  180
DDDLDETSQP N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-26615114168NO APICAL MERISTEM PROTEIN
1ut4_B2e-26615114168NO APICAL MERISTEM PROTEIN
1ut7_A2e-26615114168NO APICAL MERISTEM PROTEIN
1ut7_B2e-26615114168NO APICAL MERISTEM PROTEIN
3swm_A2e-26615117171NAC domain-containing protein 19
3swm_B2e-26615117171NAC domain-containing protein 19
3swm_C2e-26615117171NAC domain-containing protein 19
3swm_D2e-26615117171NAC domain-containing protein 19
3swp_A2e-26615117171NAC domain-containing protein 19
3swp_B2e-26615117171NAC domain-containing protein 19
3swp_C2e-26615117171NAC domain-containing protein 19
3swp_D2e-26615117171NAC domain-containing protein 19
4dul_A2e-26615114168NAC domain-containing protein 19
4dul_B2e-26615114168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapNP_001266054.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3391840.0EU339184.1 Cicer arietinum NAC transcription factor protein 2 (NAC2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001266054.11e-141NAC transcription factor 25-like
SwissprotQ8GWK63e-50NC104_ARATH; NAC domain-containing protein 104
TrEMBLC0IN051e-139C0IN05_CICAR; NAC transcription factor 25-like
STRINGXP_004503931.11e-140(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-52xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]