PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g20650
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family RAV
Protein Properties Length: 312aa    MW: 36600.5 Da    PI: 8.014
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g20650genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.44.6e-10452155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                s++kGV    ++g W A+I+       + +r++lg+f t+ eAa a++ a+ +  g
  CA12g20650  4 SRFKGVV-GQNNGHWGAQIYT------NhQRIWLGTFKTETEAAMAYDSAAIRVLG 52
                6899996.6679******988......44**********99**********99776 PP

2B394.66.6e-30133216185
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                 f+k+ltpsdv+k++rlv+pkk+a ++  +    ++ +++++d+s +sW+++++y+k+s+++v+tkGW++Fvk++gL+++D++vF l 
  CA12g20650 133 FQKELTPSDVGKLNRLVIPKKYAMKYfpQ---IQDEEMIFYDTSRKSWKFRYCYWKSSQSFVFTKGWNKFVKDKGLRAKDTLVFNLC 216
                 99************************633...35668***********************************************974 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.50E-18452No hitNo description
SuperFamilySSF541711.11E-12454IPR016177DNA-binding domain
PfamPF008471.1E-5553IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-15555IPR001471AP2/ERF domain
PROSITE profilePS5103214.961565IPR001471AP2/ERF domain
SMARTSM003802.3E-14571IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.4E-33130216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-28131219IPR015300DNA-binding pseudobarrel domain
CDDcd100172.71E-29132215No hitNo description
PfamPF023627.6E-27133216IPR003340B3 DNA binding domain
PROSITE profilePS5086314.269133237IPR003340B3 DNA binding domain
SMARTSM010196.0E-23133237IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MKGSRFKGVV GQNNGHWGAQ IYTNHQRIWL GTFKTETEAA MAYDSAAIRV LGHEHEHEHA  60
HRNLAWTNST IQEQDFQTQF STEDILRMIK EGSYTSKFDE YLKEKFVHHF QSLKTLPTMA  120
EGNGAEFSYK QLFQKELTPS DVGKLNRLVI PKKYAMKYFP QIQDEEMIFY DTSRKSWKFR  180
YCYWKSSQSF VFTKGWNKFV KDKGLRAKDT LVFNLCEFKN VTKENCNAFV IDVVKCIEVL  240
PMDLTLNHQQ EQGQVEESIG DNEVKKKEFM RAQTFDDHDV NDALEPIWLF GKQIGWRETK  300
MAMEFNKYSP R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-2613221413101DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755151e-123HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016549042.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6885e-80RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A1U8EP900.0A0A1U8EP90_CAPAN; AP2/ERF and B3 domain-containing transcription factor At1g51120-like
STRINGSolyc03g083110.1.11e-175(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52522339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.12e-82RAV family protein