PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g17560
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 85aa    MW: 9896 Da    PI: 8.4302
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g17560genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding361.7e-11346344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WTt   +++ da +++ ++   +W+ Iar++g g++++++k ++
       CA12g17560  3 TWTTKQNKKFEDALALYDKDtpdRWHNIARYVG-GKSAEEVKRHY 46
                     6********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.2E-6152IPR001005SANT/Myb domain
PROSITE profilePS5129312.729154IPR017884SANT domain
Gene3DG3DSA:1.10.10.607.0E-5252IPR009057Homeodomain-like
SuperFamilySSF466895.55E-13358IPR009057Homeodomain-like
PfamPF002492.3E-8346IPR001005SANT/Myb domain
CDDcd001672.58E-7349No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MATWTTKQNK KFEDALALYD KDTPDRWHNI ARYVGGKSAE EVKRHYELLE KDVMKIENDQ  60
VPLPNYRANA SNGRSNYANE QRYC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-274831187RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755247e-75HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016549902.15e-56PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1732e-31RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1U8ERP91e-54A0A1U8ERP9_CAPAN; Protein RADIALIS-like 6
TrEMBLA0A2G2VI842e-54A0A2G2VI84_CAPBA; Uncharacterized protein
TrEMBLA0A2G2YA251e-54A0A2G2YA25_CAPAN; protein RADIALIS-like 3
TrEMBLA0A2G3B4951e-54A0A2G3B495_CAPCH; Protein RADIALIS-like 6
STRINGPGSC0003DMT4000399745e-45(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.13e-34RAD-like 6