PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g14940
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 293aa    MW: 32298.8 Da    PI: 4.664
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g14940genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.8e-192473255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                +y+G+r+++ +g+W+AeIrdp     +  r++lg+f taeeAa+a++  +++++g
  CA12g14940 24 QYRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTFSTAEEAARAYDVEARRIRG 73
                69*******.**********94....35************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.45E-332482No hitNo description
SMARTSM003801.4E-362487IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-222483IPR016177DNA-binding domain
PROSITE profilePS5103224.0652481IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-322483IPR001471AP2/ERF domain
PfamPF008472.2E-112573IPR001471AP2/ERF domain
PRINTSPR003678.3E-122536IPR001471AP2/ERF domain
PRINTSPR003678.3E-124763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
SKSLNSVDSN KEIEKSSKRK RKNQYRGIRQ RPWGKWAAEI RDPQKGVRVW LGTFSTAEEA  60
ARAYDVEARR IRGNKAKVNF PDEAPVPAPR QAAKVNPEKV LSDESSNPVL SDTALMNLTD  120
GCCNNLGFFE EKTKKLYGYE VLRTTTVNMG PNSYVPPPAA GVYFNSDQGS NSFDPSDFGW  180
GETCSRTPEI SSVLSAAIEC DETQFVEGAD VEVKLKSCSN NLVPDDGNTA NKPPEEFPAF  240
ESQMKFFHTP YPEANWDVSV DAFLNADASQ GGENAVDLWS IDELSSLMRG VY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-222481260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1699430.0KF169943.1 Capsicum annuum var. annuum cultivar Criollo de Morales 334 jasmonic acid and ethylene responsive factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016572993.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A1U8GW130.0A0A1U8GW13_CAPAN; ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A2G2Y9490.0A0A2G2Y949_CAPAN; Ethylene-responsive transcription factor RAP2-3
STRINGPGSC0003DMT4000742481e-164(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.32e-47related to AP2 12