PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g14430
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 270aa    MW: 30539.5 Da    PI: 7.5324
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g14430genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-1960109255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa  +++a+++++g
  CA12g14430  60 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAALVYDEAALRFKG 109
                 7********.**********94....45************************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.2E-3259118IPR001471AP2/ERF domain
PfamPF008476.8E-1360109IPR001471AP2/ERF domain
SMARTSM003801.6E-3760123IPR001471AP2/ERF domain
CDDcd000181.72E-3360118No hitNo description
SuperFamilySSF541712.29E-2160118IPR016177DNA-binding domain
PROSITE profilePS5103224.47460117IPR001471AP2/ERF domain
PRINTSPR003675.6E-116172IPR001471AP2/ERF domain
PRINTSPR003675.6E-118399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MSAMVSVLSQ VIGNTNNNNA TTNISSLSSV HGINPLTLPQ SAVATTNQIQ EQGNQLRKRH  60
YRGVRQRPWG KWAAEIRDPK KAARVWLGTF DTAEAAALVY DEAALRFKGN KAKLNFPERV  120
QSGNTQYLAT THHHQQQLFD HQQQHYSSIN NNNNNIFDLI SHMVTQPNLY QQHFPNVHHY  180
TELLPGGSNN NIDHMMNFGV SEPSFYHQQS SSGGNFASPN TSLELQQQQS SYYYNQEEDF  240
LRFPMNFWNS STSIGPPSES NWDDFGPRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2857123269ATERF1
3gcc_A1e-2857123269ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-51HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016549660.10.0PREDICTED: ethylene-responsive transcription factor ERF114-like, partial
TrEMBLA0A1U8F1Z10.0A0A1U8F1Z1_CAPAN; ethylene-responsive transcription factor ERF114-like
STRINGSolyc12g042210.1.11e-93(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.17e-36ERF family protein