PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g10100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bZIP
Protein Properties Length: 371aa    MW: 41685.4 Da    PI: 5.0758
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g10100genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.39.4e-1085121439
                 XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHH CS
      bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee.kvkeLe 39 
                 +k  rr+++NReAAr+sR+RKka++++Le+ k k L+
  CA12g10100  85 DKMNRRLAQNREAARKSRLRKKAYVQQLENsKLKLLQ 121
                 7999*************************73444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.3E-781128No hitNo description
SMARTSM003386.5E-782164IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.86484128IPR004827Basic-leucine zipper domain
PfamPF001701.0E-685121IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.29E-687126No hitNo description
PROSITE patternPS00036089104IPR004827Basic-leucine zipper domain
PfamPF141442.2E-27173247IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MNSSTYTQFV ASKRMGICDP IQQIGMWGDF KGSSFPDTLI LEVENCLESE MPIMEKRLDN  60
ETEEPSHVTV GRSNIYEPET SKRIDKMNRR LAQNREAARK SRLRKKAYVQ QLENSKLKLL  120
QLEQELERAR QQGLYVGGGL DTSQIGCSGT ANSEIATFEM EYGHWVEEQD RQTDDLKSAL  180
NSQIGEIEMR ILVEGCLNHY FDLFRLKATA ANTDVLYLMS GTWKASAERF FLWIGGFRPS  240
ELLKVLTPHV EPLTEQQVQE VCNLTQSCQQ AEDALSQGLV KLHQILAEAV AAGTLGDGII  300
LPQMTATIEK LEALVRFVNQ ADHLRQETLL QMSCILSVQQ SAQGLLALGD YFKRLRSLSS  360
LWSSRTSEPA *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX825440.0X82544.1 S.tuberosum mRNA for leucine zipper transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016555654.10.0PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A-like isoform X6
SwissprotP142320.0TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBLA0A1U8FH660.0A0A1U8FH66_CAPAN; Transcription factor TGA7
TrEMBLA0A2G2Y8940.0A0A2G2Y894_CAPAN; TGACG-sequence-specific DNA-binding protein TGA-1A-like isoform X6
STRINGSolyc04g054320.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7802497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-132bZIP family protein
Publications ? help Back to Top
  1. Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J
    A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems.
    Plant Mol. Biol., 2000. 42(5): p. 679-88
    [PMID:10809441]
  2. Johnson C,Boden E,Desai M,Pascuzzi P,Arias J
    In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor.
    Plant J., 2001. 28(2): p. 237-43
    [PMID:11722767]
  3. Katagiri F,Seipel K,Chua NH
    Identification of a novel dimer stabilization region in a plant bZIP transcription activator.
    Mol. Cell. Biol., 1992. 12(11): p. 4809-16
    [PMID:1406663]
  4. Miao ZH,Lam E
    Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants.
    Plant J., 1995. 7(6): p. 887-96
    [PMID:7599649]
  5. Pascuzzi P,Hamilton D,Bodily K,Arias J
    Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor.
    J. Biol. Chem., 1998. 273(41): p. 26631-7
    [PMID:9756903]