PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g02850
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family AP2
Protein Properties Length: 528aa    MW: 58181.2 Da    PI: 6.96
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g02850genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.45.3e-11244301155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  +   g  rk  +   ++ +++Aa+a++ a++k++g
  CA12g02850 244 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqARKGRQGSGYDKEDKAARAYDLAALKYWG 301
                 57*******************5555444656999999****99*************98 PP

2AP249.78.9e-16345396155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  CA12g02850 345 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 396
                 57****************988532...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.13E-17244311No hitNo description
SuperFamilySSF541711.37E-12244310IPR016177DNA-binding domain
PfamPF008473.7E-8244301IPR001471AP2/ERF domain
SMARTSM003802.3E-18245315IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-10245310IPR001471AP2/ERF domain
PROSITE profilePS5103215.988245309IPR001471AP2/ERF domain
PRINTSPR003673.6E-6246257IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-18345405IPR016177DNA-binding domain
CDDcd000181.26E-11345404No hitNo description
PfamPF008474.6E-10345396IPR001471AP2/ERF domain
SMARTSM003801.6E-31346410IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-18346404IPR001471AP2/ERF domain
PROSITE profilePS5103219.151346404IPR001471AP2/ERF domain
PRINTSPR003673.6E-6386406IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MAPDNNNWLS FSLSSMEMLN NSSPSSAHHH HHHQSNNMKL SSNFDLGSSS ADSHQYYFAD  60
NFFPHGWSNQ KLQVMYPDVE KEAMRINING DSSSLFQNFV DSQIHQQVPP KLEDFLGGDS  120
SSLTQDSSSL THMYNYNDPH SHHHQDFKSL TGFQAFSTNS GSEVENSVGT EFGMNESCNE  180
LGYTTCVAPP PPLAPAPVPA ASTGALSLAV NATTNHCPEK EKAIVAVVDE SCKKISDTFG  240
QRTSIYRGVT RHRWTGRYEA HLWDNSCRRE GQARKGRQGS GYDKEDKAAR AYDLAALKYW  300
GPTATTNFPV ANYAKEVEEM KHMTKQEFIA SLRRWKSSGF SRGASIYRGV TRHHQQGRWQ  360
ARIGRVAGNK DLYLGTFATE EEAAEAYDIA AIKFRGVNAV TNFEMNRYDV EAIMKSSLPV  420
GGTAKRLKLS LESEQKSSPS NQQLTQCNSS SSNTSSSNNI NFGAVPPVSA IPCGVPFDTA  480
TPAYYHHNFF PYLHPGNAGV PDTSGAVTAM PLLSSAADLY IWPHQSY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755231e-99HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016551749.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-157AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A2G2VE110.0A0A2G2VE11_CAPBA; AP2-like ethylene-responsive transcription factor AIL6
STRINGSolyc11g010710.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-136AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]