PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g14070
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family AP2
Protein Properties Length: 441aa    MW: 49201.3 Da    PI: 7.7013
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g14070genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.3e-17103152155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  CA11g14070 103 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 152
                 78*******************......55************************997 PP

2AP241.43.7e-13195245155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  CA11g14070 195 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 245
                 89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.17E-16103161IPR016177DNA-binding domain
PfamPF008474.9E-9103152IPR001471AP2/ERF domain
PROSITE profilePS5103217.794104160IPR001471AP2/ERF domain
CDDcd000181.48E-11104162No hitNo description
SMARTSM003801.3E-32104166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-17104161IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-17195254IPR016177DNA-binding domain
CDDcd000185.86E-26195255No hitNo description
PfamPF008471.1E-8195245IPR001471AP2/ERF domain
PROSITE profilePS5103215.725196253IPR001471AP2/ERF domain
SMARTSM003803.2E-32196259IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-16196253IPR001471AP2/ERF domain
PRINTSPR003675.7E-6197208IPR001471AP2/ERF domain
PRINTSPR003675.7E-6235255IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MMLDLNLSAI YDEKIPEVGH GGDERNRSCC NNDDDHHHPS EYVTQQLFPV NTAELNTRAH  60
TSQNADWIDR STYDPANTVG FREMPKQQQP VKKSRRGPRS RSSQYRGVTF YRRTGRWESH  120
IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGVDADINFN LSDYEEGMKQ MSNLSKEEFV  180
HVLRRQSTGF SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY IYLGLFDSEV EAARAYDKAA  240
IKCNGRDAVT NFEPSAYEGE PNSNPQIEGS QQDLDLNLGI ATSSPKEIER SSVFQYHPYD  300
MQESTKSQMD KSGSQTVGSS HFKGLPAVTS EQAHLWNGVY SNFFPSYEER ASGKRIDVGT  360
SHGHPNWAMQ MHGQVGTTSM SMFSAAASSG FSTPATTASA SVMSGPNNLN NLNLSFASYS  420
TPSTNTTQYY YQIRPPLPPP *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5869530.0HQ586953.1 Solanum lycopersicum AP2 transcription factor SlAP2d mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016548531.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
SwissprotB8AXC31e-102AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A2G2YGH30.0A0A2G2YGH3_CAPAN; Ethylene-responsive transcription factor RAP2-7
STRINGPGSC0003DMT4000653130.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-105related to AP2.7