PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g04530
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ZF-HD
Protein Properties Length: 273aa    MW: 30023.4 Da    PI: 8.3613
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g04530genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer76.15.1e-2463113352
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnF 52 
                  +v+YkeClkNhAas+GghavDGCgEf++s++++ +++ +l CaACg   +F
   CA11g04530  63 AVTYKECLKNHAASIGGHAVDGCGEFIASPESTqSNPISLSCAACGYFISF 113
                  799**************************999889***********88777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.2E-2064113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257749.0E-1664113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.6E-2165113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.21766117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.605.4E-28151219IPR009057Homeodomain-like
SuperFamilySSF466891.08E-17153219IPR009057Homeodomain-like
TIGRFAMsTIGR015659.2E-25158215IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDLTCTNNPT PTPSHTPTKT PDSEIDTPPL IKPLSFTNFT FKNHHHNHNH NRQPPCAPPS  60
STAVTYKECL KNHAASIGGH AVDGCGEFIA SPESTQSNPI SLSCAACGYF ISFRHHILPP  120
IHHFSPSSSP SSSPSPPPPP PLPQPQPQPI KAEKPCGRKR FRTKFTQEQK EKMHLFSEKL  180
GWKLQKVDEV AVDEFCREVG VGKGVLRVWM HNNKNTFGKK VHSFENKNGF NMNGGTSSNE  240
DNHRHNDNNN DNSTSNCELH LHISTNGSSS SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-231592161875ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016574674.11e-140PREDICTED: zinc-finger homeodomain protein 10-like
TrEMBLA0A2G2VLP71e-139A0A2G2VLP7_CAPBA; Zinc-finger homeodomain protein 11
STRINGPGSC0003DMT4000802881e-101(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.17e-42homeobox protein 30