PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g01060
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 242aa    MW: 26716.4 Da    PI: 6.8739
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g01060genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.62.2e-294106198
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C++ C l+p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +Pv+G+vg++ ++++q +q+++e 
  CA11g01060   4 SCNGCRVLRKGCSETCSLRPCLqwirsPESQANATVFLAKFYGRAGLINLINAGPHHLRPAIFKSLLYEACGRIINPVNGSVGLMCSGNWQRCQEAVES 102
                 6***********************************************************************************************998 PP

      DUF260  95 allk 98 
                 +l +
  CA11g01060 103 VLNG 106
                 8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.0293109IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-234102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSETCS LRPCLQWIRS PESQANATVF LAKFYGRAGL INLINAGPHH  60
LRPAIFKSLL YEACGRIINP VNGSVGLMCS GNWQRCQEAV ESVLNGSTIV QVPINDESNN  120
NNTDQIVPLK SCDIRHIAKN SSNTEQVIRT RNGRFKRKAN NSVAEEAAEE YLMTNEPPSK  180
FSITGWDQLN EMDELKRAPS HDSFSVETVE PTLLVNRVDP VKLEENGDVG LELTLGLMSP  240
I*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755171e-44HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016548850.11e-179PREDICTED: LOB domain-containing protein 42
SwissprotQ9CA302e-72LBD42_ARATH; LOB domain-containing protein 42
TrEMBLM1B5R61e-135M1B5R6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000377111e-134(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.12e-72LOB domain-containing protein 42