PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g21870
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family G2-like
Protein Properties Length: 291aa    MW: 31841.7 Da    PI: 6.9404
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g21870genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.81.6e-3089142155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  CA10g21870  89 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 142
                 59*******************.********************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-2086146IPR009057Homeodomain-like
PROSITE profilePS5129411.05986145IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-3088147IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-2490142IPR006447Myb domain, plants
PfamPF002491.1E-792141IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MREEDSNWFA KWEEELPKPE ELMPLSQTLI TPDLAIAFDI PNPTSPNPQS KQQQTPLVPS  60
SQPNSSAEFE SAELNGTGGG DEPARTLKRP RLVWTPQLHK RFVDAVAHLG IKNAVPKTIM  120
QLMSVDGLTR ENVASHLQKY RLYLKRMQGL SNSGSGGSNA QSLSGAGVDP AMDNLFASSP  180
VPAHFLHPGR GNSDHFMPFV PVAPMQHHHH MGVVVGHHPQ VQQQYRQFGS PANGHFEHPF  240
LSRQSQQQVQ RMGTSVHNGS PVVSSYVEDV DSATTANGRK VLTLFPTGED *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-3289145157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016543941.10.0PREDICTED: transcription factor PCL1-like
SwissprotO222102e-61MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A1U8EBZ40.0A0A1U8EBZ4_CAPAN; Uncharacterized protein
TrEMBLA0A2G2Y0Z70.0A0A2G2Y0Z7_CAPAN; transcription factor PCL1-like
STRINGPGSC0003DMT4000184850.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24322354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.18e-90G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]