PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g21710
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family E2F/DP
Protein Properties Length: 294aa    MW: 32603.7 Da    PI: 5.9423
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g21710genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.68.8e-2836118271
     E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                 ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  CA10g21710  36 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfsdasnslacpdqkqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 118
                 689********...*****999*******************************************************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.0E-1232293IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.105.3E-4631123IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-3435118IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.5E-2537118IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.9E-2138119IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144586.69E-42124226IPR014889Transcription factor DP, C-terminal
SMARTSM011384.5E-71125291IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440747.32E-43125245No hitNo description
PfamPF087811.2E-42126245IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MVSSLLELPE DGTIFGVEVD SAKKKRAQRA TGGDKSGRGL RQFSMKVCEK VESKGRTTYN  60
EVADELVAEF SDASNSLACP DQKQYDEKNI RRRVYDALNV LMAMDIISKD KKEIQWKGLP  120
RTDANDIEEL KTERLSLRNR IEKKAAYLEE LEEQYVGLQN LIKRNEQLYG SGNAPSGGVA  180
LPFILVQTRP HATVEVEISE DMQLVHFDFN STPFELHDDN YVLKAMKFCG RQNDDVVAAQ  240
NVAAADGGEG SSSSMANMFQ HQIPHPSAPN TSARIPTSPP VPGILKARVK HEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B5e-4129124194PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC6845580.0KC684558.1 Solanum lycopersicum transcription factor DP/E2 dimerization partner-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016543961.10.0PREDICTED: transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-135DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A1U8EC190.0A0A1U8EC19_CAPAN; Transcription factor-like protein DPB
TrEMBLA0A2G2Y1080.0A0A2G2Y108_CAPAN; transcription factor-like protein DPB isoform X1
TrEMBLA0A2G3BI630.0A0A2G3BI63_CAPCH; Transcription factor-like protein DPB
STRINGSolyc10g078430.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-123Transcription factor DP