PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g20880
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family SBP
Protein Properties Length: 329aa    MW: 35913.5 Da    PI: 8.113
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g20880genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP99.52.8e-3136104176
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                 +CqvegC+adls+ak y++rhkvC +hsk+p+++v+gleqr       fh+l efD++krsCrrrLa hnerrrk+
  CA10g20880  36 RCQVEGCQADLSDAKAYYSRHKVCGMHSKSPTAVVAGLEQR-------FHQLPEFDQGKRSCRRRLACHNERRRKP 104
                 6**************************************97.......7*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.1E-253091IPR004333Transcription factor, SBP-box
PROSITE profilePS5114124.32434104IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.8E-3135108IPR004333Transcription factor, SBP-box
PfamPF031108.0E-2137103IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGTWKKSEME LSSSDSLNSL KFGKKIYFGN GGQPPRCQVE GCQADLSDAK AYYSRHKVCG  60
MHSKSPTAVV AGLEQRFHQL PEFDQGKRSC RRRLACHNER RRKPPSGSLF STHYGNLSSS  120
VFENNSSRSG SFLVDFSSHQ NVNESSWPNT RASEQGWDHP STASGKFLQR PWLNNSEKAA  180
SELVLQGSTT RTSYPGVPSG DCFPGVSDSN GALSLLSNRS WGSRNQPPSL GVNSQINVNE  240
THVIQPSGSH VAPTNHFSSP SLGFKGNEAS SSLHELPPDL GLGQMLQASD NPYCGELEIA  300
QHGDGRQHME MDHSKGYHPS VQNVHWTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-21371031184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2445800.0AC244580.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-40g6 map 10, complete sequence.
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016543868.10.0PREDICTED: squamosa promoter-binding-like protein 9
TrEMBLA0A2G2YP470.0A0A2G2YP47_CAPAN; Uncharacterized protein
STRINGSolyc10g078700.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45712241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57920.12e-41squamosa promoter binding protein-like 15