PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g18830
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 94aa    MW: 11004.2 Da    PI: 8.8082
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g18830genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.91.5e-10448344
                     SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrw 44
                     +WTt   +++ +a  ++ ++     W+ Iar++g g++ ++++ ++
       CA10g18830  4 NWTTKQNKKFEEALVMYDKDnngeKWHNIARHVG-GKSVEEVRRHY 48
                     8*********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.0E-7154IPR001005SANT/Myb domain
PROSITE profilePS5129312.982156IPR017884SANT domain
Gene3DG3DSA:1.10.10.602.5E-5358IPR009057Homeodomain-like
SuperFamilySSF466893.51E-13459IPR009057Homeodomain-like
PfamPF002491.6E-7448IPR001005SANT/Myb domain
CDDcd001672.65E-7452No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MATNWTTKQN KKFEEALVMY DKDNNGEKWH NIARHVGGKS VEEVRRHYDL LLRDITQIEN  60
GQVPLPNYRN ASESNARGYA NEQRYYMSLS YIH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-215701175RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755229e-93HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016544879.14e-58PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1739e-27RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2G2YNM51e-63A0A2G2YNM5_CAPAN; Protein RADIALIS-like 2
STRINGSolyc10g080920.1.11e-50(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-29RAD-like 6