PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g11370
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family FAR1
Protein Properties Length: 750aa    MW: 84500.2 Da    PI: 6.433
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g11370genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1545.7e-1765140190
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 +f+++YA +vGFs+ + + ++ k ng i++ +f Cs+e +r+++ ++              C+a+l+++k++++ w+vtk++++HnH+++
  CA10g11370  65 NFFEAYAMRVGFSIHVGQFSRAKPNGPIITWDFSCSREVFRSRNIES--------------CNAMLRIEKKSSDSWVVTKFVEDHNHSMV 140
                 69****************************************99877..............**************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-1465140IPR004330FAR1 DNA binding domain
PfamPF105519.6E-29280372IPR018289MULE transposase domain
PROSITE profilePS5096611.127557593IPR007527Zinc finger, SWIM-type
PfamPF044348.8E-11559591IPR007527Zinc finger, SWIM-type
SMARTSM005751.6E-8568595IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MNSEVTDIVG QKRQKSGERV SESNQNPKQG LPDNLAERDS TIEVDDGEEK PYVGMEFQTE  60
EAAKNFFEAY AMRVGFSIHV GQFSRAKPNG PIITWDFSCS REVFRSRNIE SCNAMLRIEK  120
KSSDSWVVTK FVEDHNHSMV NPRKVNYLRP RKHVAGASKT VGEVPGAPTV VMVPPVVIPV  180
DGNHVFVSSN EGVKDASAVE SNRVTKNFSP AIPLMFIQPC SRKRTLGRDA HNLLDYFKKM  240
QAENPGFYYA IQLDDENRMT NAFWADARSR ISYRHFGDAV IFDTMYRPNL FQVPFAPFTG  300
VNHHGQMVLF GCGLLLDESE SSFTWLFRTW LSAMNNRPPV SITTDQDRAI KTAVNVVLPS  360
TRHCICKWHI LREGQERLAH VYMAHPSFYG ELYSCINYSE TIEDFESSWV SVLDKYKLGK  420
NEWLQAVYNA RDQWAPVYFR DSFFAALPSN QGVTSFFDGY VNQQTTLPMF FKQYERALES  480
SLEREIASDF DTNCTTPMLR TPSPMEQQAA NLFTKIVFAK FQEELVETFA HTANKIDGDE  540
TRSKFRVAKY EQDDKAYIVM LNFAEMKASC SCQMFEYSGI LCRHILTVFT VTNVLKVPSH  600
YILKRWTRNA KVGQGSDEED IVKQGINSLT SRFNHLCVEA LRYAEEGAVS VESYDAAVSA  660
LRDGLRKISI VAKNVARPLT SQGSGSTQDE SIKSTPATSD TAPSLWTWQD AMPHHFNLND  720
GGLTAGDLNQ PTMTPVAINH DGGLADNVV*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016538323.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_016538324.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A2G2YYN70.0A0A2G2YYN7_CAPAN; Protein FAR1-RELATED SEQUENCE 3
STRINGSolyc01g096850.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]