PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g10120
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family SBP
Protein Properties Length: 190aa    MW: 21342.2 Da    PI: 10.8835
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g10120genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.72.2e-4063141178
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS.EEETTT--SS--S-STTTT-------S--- CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr.fhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 +CqvegC+adl++ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsr fh lsefD++krsCr+rLa+hn+rrrk+q+
  CA10g10120  63 RCQVEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRlFHLLSEFDNGKRSCRKRLADHNRRRRKNQQ 141
                 6**********************************************999**************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-3357126IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.66761139IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.15E-3762143IPR004333Transcription factor, SBP-box
PfamPF031106.8E-3064138IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MVVPKSEPQF VSAGGIDFGS SSSSRIGLNL GGRTYFSSSE DDFVNRLYRR TRAVEAGSVN  60
TPRCQVEGCS ADLTHAKHYH RRHKVCEFHS KASTVIAAGL TQRFCQQCSR LFHLLSEFDN  120
GKRSCRKRLA DHNRRRRKNQ QANLENSSKS QLESTRNSSS DSLASKFLIQ VLILIFLIRK  180
KAKKYSSII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-3156138384squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016545867.11e-115PREDICTED: squamosa promoter-binding-like protein 8
SwissprotQ8GXL31e-69SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBLA0A1U8EF591e-113A0A1U8EF59_CAPAN; Uncharacterized protein
TrEMBLA0A2G2YL661e-113A0A2G2YL66_CAPAN; squamosa promoter-binding-like protein 8
STRINGPGSC0003DMT4000749761e-100(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48462341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.19e-72squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Xing S, et al.
    SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility.
    Plants (Basel), 2013. 2(3): p. 416-28
    [PMID:27137384]