PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g08260
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 236aa    MW: 26470 Da    PI: 9.8233
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g08260genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-18122171255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr+++ +g+W+AeIrdp+    r +r++lg+f tae+ a+a+++a+ +++g
  CA10g08260 122 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFTTAEDTARAYDRAAIEFRG 171
                 59*******.**********82....48************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-12122171IPR001471AP2/ERF domain
CDDcd000188.26E-32122178No hitNo description
Gene3DG3DSA:3.30.730.101.7E-30122179IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-20122179IPR016177DNA-binding domain
PROSITE profilePS5103224.092122179IPR001471AP2/ERF domain
SMARTSM003808.1E-35122185IPR001471AP2/ERF domain
PRINTSPR003674.3E-11123134IPR001471AP2/ERF domain
PRINTSPR003674.3E-11145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MNHHLSQPKF SDEQEFSIMV AALKNVITGS THSSAVLDAA QEFRYAMTTT MTSATIASPS  60
TNMSNFVEPP LFCVPTKPEP CQFCRINGCL GCNYFGTLAA ADNKNNKAKI AAMKKKKKKK  120
KNYRGVRQRP WGKWAAEIRD PRRAARVWLG TFTTAEDTAR AYDRAAIEFR GPRAKLNFSF  180
ADYTSIQQQS NNSSSSSPLQ VLLLQQQQQL PIQLQQGVNT EEEFWDQFMI SNNEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-24119178262ATERF1
3gcc_A4e-24119178262ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114120KKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754492e-93HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016544751.11e-124PREDICTED: ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ062e-35EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A2G2YKA01e-148A0A2G2YKA0_CAPAN; Ethylene-responsive transcription factor
STRINGXP_009762423.15e-96(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.13e-31redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]