PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g04560
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family SBP
Protein Properties Length: 142aa    MW: 16271.1 Da    PI: 7.4708
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g04560genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.31.5e-4056133278
                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTS.SEEETTT--SS--S-STTTT-------S--- CS
         SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCs.rfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 Cqve+C+ad+ +ak yhrrhkvCe+h+kap+v + gl qrfCqqCs rfh+l efD++krsCrrrLa+hnerrrk+++
  CA10g04560  56 CQVEDCTADMVDAKAYHRRHKVCEFHAKAPAVPIGGLLQRFCQQCSsRFHQLAEFDDTKRSCRRRLAGHNERRRKSAH 133
                 *********************************************55****************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375751.6E-561141IPR017238Squamosa promoter-binding protein
Gene3DG3DSA:4.10.1100.101.2E-3249118IPR004333Transcription factor, SBP-box
PROSITE profilePS511413053131IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.26E-3654134IPR004333Transcription factor, SBP-box
PfamPF031103.3E-3156130IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MENSKWEGKR NMMEADMEEQ DDEEDEDFVE DTKRKRVLTR SGRKVSMGEG PRQPSCQVED  60
CTADMVDAKA YHRRHKVCEF HAKAPAVPIG GLLQRFCQQC SSRFHQLAEF DDTKRSCRRR  120
LAGHNERRRK SAHDSPGEGS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-34561301184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754496e-89HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016545510.14e-83PREDICTED: squamosa promoter-binding protein 1
RefseqXP_016545511.14e-83PREDICTED: squamosa promoter-binding protein 1
SwissprotQ387417e-53SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A1U8EGJ99e-82A0A1U8EGJ9_CAPAN; Squamosa promoter-binding-like protein
TrEMBLA0A2G2YJJ29e-82A0A2G2YJJ2_CAPAN; Squamosa promoter-binding-like protein
STRINGPGSC0003DMT4000587532e-74(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74924105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.11e-40squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]