PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g18590
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family AP2
Protein Properties Length: 381aa    MW: 42966.7 Da    PI: 8.0556
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g18590genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.11.2e-0945110155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pse....ng......krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  ++    n+       +  f  g ++ +  Aa a++ a++k++g
  CA09g18590  45 SIYRGVTRHRWTGRYEAHLWDkNCWnesqNKkgrqeyGNYIFFSGAYDDEGTAAHAYDLAALKYWG 110
                 57*******************99997764338765543388999*****66*************98 PP

2AP251.13.3e-16153204155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  CA09g18590 153 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 204
                 89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.66E-1145120IPR016177DNA-binding domain
PfamPF008477.0E-545110IPR001471AP2/ERF domain
CDDcd000182.06E-1345120No hitNo description
SMARTSM003803.0E-1746124IPR001471AP2/ERF domain
PROSITE profilePS5103216.05446118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-1146119IPR001471AP2/ERF domain
PRINTSPR003674.5E-64758IPR001471AP2/ERF domain
CDDcd000181.36E-23153214No hitNo description
SuperFamilySSF541711.11E-17153214IPR016177DNA-binding domain
PfamPF008476.1E-12153204IPR001471AP2/ERF domain
SMARTSM003801.2E-24154218IPR001471AP2/ERF domain
PROSITE profilePS5103218.334154212IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17154213IPR001471AP2/ERF domain
PRINTSPR003674.5E-6194214IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MGKLSEQNQI RNNNSSINNI IGGSVVKVKR TRKTVPRDSP PQRSSIYRGV TRHRWTGRYE  60
AHLWDKNCWN ESQNKKGRQE YGNYIFFSGA YDDEGTAAHA YDLAALKYWG SETILNFPVS  120
TYEKEIKEME GQSREEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL  180
YLGTYATQEE AATAYDMAAI EYRGLNAVTN FDLSRYIKWL KPNNNNNNNN NNQPNPNTET  240
NMIPTPNHNI ESTSTLTTTT TTTTTCVSAT SVYPQLQITS GTTMLDASIS QSRPPPATSA  300
LGLLLQSTKF KEMMEMTLAA ECPPVPVELP DPGPPQSSSF PEDIKTYFDT QEFGHGQGED  360
MMFNEINSFM QPLFKFDYDA *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016540567.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-107AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2G2YVB30.0A0A2G2YVB3_CAPAN; AP2-like ethylene-responsive transcription factor
STRINGSolyc12g010490.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.12e-88ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]