PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g07450
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 379aa    MW: 40330.9 Da    PI: 6.4414
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g07450genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51.1e-202877255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAaka++aa+++++g
  CA09g07450 28 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAKAYDAAAREFRG 77
                6********.**********8...557************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.56E-222886IPR016177DNA-binding domain
PROSITE profilePS5103223.8812885IPR001471AP2/ERF domain
SMARTSM003801.3E-392891IPR001471AP2/ERF domain
CDDcd000186.63E-192885No hitNo description
Gene3DG3DSA:3.30.730.107.3E-322885IPR001471AP2/ERF domain
PfamPF008475.3E-142877IPR001471AP2/ERF domain
PRINTSPR003675.4E-112940IPR001471AP2/ERF domain
PRINTSPR003675.4E-115167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MAMKEKVNGG MKVGNSKCNG VNNNKDVHYR GVRKRPWGRY AAEIRDPGKK SRVWLGTFDT  60
AEEAAKAYDA AAREFRGCKA KTNFPLPSEN QNGSDSGSPD ESFSGENRAH APSEFELTRC  120
LGAGGEGVGN GGRLAEVGLV RNGDTIVHAP TELDLTRLLG AGGEGGDNSG YSAEVGLVRN  180
GFPIFHHQPP IEAPMMSNRS SPAESYSGET IINTLQAPPE LYLMRRLVAG GDGDGNGGHS  240
AKVGYPFFHH QLSMAAPSES STGETVVNAP HAPPELDLTR RLGAVVQGAG YVSNGFPIFH  300
QQPAMAVLPN GQPMLLFDGN FVRTGLLNRP QPYQFEPVPA QLNSVTDRVG HSETDSSSVG  360
LSRRELNLDL NLAPPMEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-212586264ATERF1
3gcc_A4e-212586264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016541538.10.0PREDICTED: ethylene-responsive transcription factor 4-like
RefseqXP_016541539.10.0PREDICTED: ethylene-responsive transcription factor 4-like
SwissprotQ9LW492e-48ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLA0A1U8E2M90.0A0A1U8E2M9_CAPAN; ethylene-responsive transcription factor 4-like
TrEMBLA0A1U8ECE80.0A0A1U8ECE8_CAPAN; Ethylene-responsive transcription factor 4
STRINGXP_009614490.13e-97(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.17e-30erf domain protein 9