PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g18370
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family FAR1
Protein Properties Length: 81aa    MW: 9537.72 Da    PI: 6.5139
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g18370genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1318.4e-1024801271
        FAR1 12 FsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkke 71
                F+   ++ ++++ n++i+ ++f Cske +r++++ +   +++++ etr gCka l ++k+
  CA08g18370 24 FKFYLDYAHHTNFNKSIIGQEFLCSKEEFRSKKDLE---RNKSQDETREGCKALLYISKK 80
                6666777788889*******************9888...89999************9975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.3E-62780IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MYEIGQIVSN PYIDKEFQSL DDSFKFYLDY AHHTNFNKSI IGQEFLCSKE EFRSKKDLER  60
NKSQDETREG CKALLYISKK *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754443e-40HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015167012.16e-29PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2G2Y3W31e-51A0A2G2Y3W3_CAPAN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA645860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.19e-07FAR1-related sequence 5