PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g14990
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family FAR1
Protein Properties Length: 673aa    MW: 77080.6 Da    PI: 8.1815
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g14990genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.11.9e-2055148190
        FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                 +fY e+Ak +GFs+r+++++ +    +  t+r fvC + g++  +  +++k +r+r+++r+gC+a ++++k++     +w+vt + ++HnHel 
  CA08g14990  55 EFYAEFAKGCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKAANDNKPQRNRKSSRCGCQAYMRISKTTelgVPEWRVTGFTNHHNHELL 148
                 6**************9998877356667999****************99**********************99777789*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.1E-1755148IPR004330FAR1 DNA binding domain
PfamPF105511.4E-20271361IPR018289MULE transposase domain
PROSITE profilePS509669.668549582IPR007527Zinc finger, SWIM-type
PfamPF044343.9E-7552580IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-5557584IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MMEIYGDTSD QRSLSLDDTS STEESPDQTR LSLETTNEAV PYIGLRFHNH DAAYEFYAEF  60
AKGCGFSIRR HRTEGKDGVG KGLTRRYFVC HRAGNTPVKA ANDNKPQRNR KSSRCGCQAY  120
MRISKTTELG VPEWRVTGFT NHHNHELLEP NQVRFLPAYR SISDADKSRI IMFAKTGISV  180
QQMLRLMELE KGVEPGYLPF TEKDVRNLLQ SFRKVDPEDE SIDLLRMCRN IKEKDPNFKY  240
DFSLDSNNRL ENIAWSYASS IQSYDIFGDA VVFDTTHRLT ALDMPLGIWV GVNNYGMPCF  300
FGCVLLREET LRSYSWALKA FLAFMNGKAP QTVLTDQNMC LKEAINLEMP TTKHALCIWL  360
VVAKYPSWFN AVLGERYNEW KAEFNRLYNL ESVEDFELGW RDMVNSFGLH TNRHIASLFS  420
LRSLWALPYL RSHFFAGMTT TSHSKSINAF IQRFLSAQTR LAHFVEQVAV TVDFKDQTGE  480
QQTMQQNLQN ICLKTGAPME AHAATVLTPF AFSKLQEQLV LAAHYASFQV EDGFLVRHHT  540
KLEGGRKVYW VPREGIINCS CHQFEFSGIL CRHALRVLST GNCFQIPERY LPHRWRRIST  600
PATKVLQNTQ SDHTERVQLL QSMVSTLVTE SAKSRERLDI ATENVSILLS RIREQPICSQ  660
GIRDLSSNQR NL*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016538964.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A2G2Y1N40.0A0A2G2Y1N4_CAPAN; Protein FAR1-RELATED SEQUENCE 11
STRINGXP_009765793.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA108962124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]