PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g10840
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GeBP
Protein Properties Length: 434aa    MW: 47251.2 Da    PI: 6.0728
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g10840genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573101.29e-3288190197
      DUF573   1 klfqrlwseeDeivlLqGlidfkaktgk......spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                 klfqrlw+++De+ lL+G++++++++        + + d++afy+ +k++ +++++k+qlveK+rrLKkKf++ ++k+ sgke++f+++h+q +fe+s+
  CA08g10840  88 KLFQRLWTDDDEVELLKGFLEYTTQRVLnnssaqQHHYDTTAFYDSIKSKFQLDFNKNQLVEKLRRLKKKFRTLRSKMGSGKEFAFKSAHEQVTFEISS 186
                 579********************999776555533445************************************************************* PP

      DUF573  94 kiWg 97 
                 kiWg
  CA08g10840 187 KIWG 190
                 ***8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.2E-3090190IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MASHHHPGYN DDNLDYDVDV DGDDESNSSP SVVAGEVTIA VAGVSTSDSH APLIQAERKR  60
PRIDDFAIPV ILPGAVAKKP AAVDESRKLF QRLWTDDDEV ELLKGFLEYT TQRVLNNSSA  120
QQHHYDTTAF YDSIKSKFQL DFNKNQLVEK LRRLKKKFRT LRSKMGSGKE FAFKSAHEQV  180
TFEISSKIWG NGGSYARNSP GRGGPIGFPA QHPLEDGGLD DEDAHSNPNP NSDAIVIYNS  240
PKFNLNSNPN PNGPNGIDMK TRSQKRAPQV PAEVLKAEQQ VFQPPGFSPN VPMPSTNVNP  300
MGTTPMVGVA ATAPVAAAPV VGVADTAPVA ASVPSLIEET VRNCVSPIFK ELLNNVANLN  360
RPARGFGFGF GFGGMEMSPI PLGFGGGAMS MEMMKDEKWR KQQMLELEVY SKRLELVQDQ  420
VKAQLEELRS MGS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755132e-51HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
GenBankHG9754402e-51HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016538467.10.0PREDICTED: uncharacterized protein LOC107839480
TrEMBLK4B0H60.0K4B0H6_SOLLC; Uncharacterized protein
STRINGSolyc01g097890.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40522445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.14e-52DNA-binding storekeeper protein-related transcriptional regulator