PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g09860
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family AP2
Protein Properties Length: 452aa    MW: 51704.6 Da    PI: 6.1502
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g09860genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.44e-0967132155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pse..ng........kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  ++  n+        k+  +fs g ++++e Aa+ ++ a++k++g
  CA08g09860  67 SIYRGVTRHRWTGRYEAHLWDkGTWnsNQkkkgkqvlKChFQFS-GAYDSEEAAARTYDLAALKYWG 132
                 57*******************98887433887777765556677.99******************98 PP

2AP256.66.2e-18175226155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV +++ +grW+A+I  ++    +k+ +lg++gt eeAa+a++ a+ +++g
  CA08g09860 175 SKYRGVARHHHNGRWEARIGRVYG---NKYLYLGTYGTQEEAAAAYDMAAIEYRG 226
                 89****99***********99654...4*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576120No hitNo description
SuperFamilySSF541712.16E-1267142IPR016177DNA-binding domain
CDDcd000182.84E-1667141No hitNo description
PfamPF008479.6E-767132IPR001471AP2/ERF domain
SMARTSM003808.5E-1868146IPR001471AP2/ERF domain
PROSITE profilePS5103217.02968140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-1168141IPR001471AP2/ERF domain
PRINTSPR003672.7E-66980IPR001471AP2/ERF domain
CDDcd000187.47E-16175236No hitNo description
PfamPF008479.1E-13175226IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18175236IPR016177DNA-binding domain
SMARTSM003804.4E-26176240IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-18176234IPR001471AP2/ERF domain
PROSITE profilePS5103218.241176234IPR001471AP2/ERF domain
PRINTSPR003672.7E-6216236IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006110Biological Processregulation of glycolytic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0019432Biological Processtriglyceride biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MKKSPSFSFS CSSSSSSSSC IEQQIHEVTE NKKMKLKPKP KPKLRPKRAS RAKRIANADS  60
SPTKRSSIYR GVTRHRWTGR YEAHLWDKGT WNSNQKKKGK QVLKCHFQFS GAYDSEEAAA  120
RTYDLAALKY WGPTTILNFP VETYIKEFEE MHRLNKEEYL ASLRRKSSGF SRGVSKYRGV  180
ARHHHNGRWE ARIGRVYGNK YLYLGTYGTQ EEAAAAYDMA AIEYRGPNAV TNFDISRYAD  240
WLKTLREPDL LSQMENTESS NEVQSDEVIV QYQPVQQEEN QEDFMQEELA FEPLFVPKLE  300
FTPALDSDEV TQPKVLKLEF APKMESAAEI IKGKGYQEED DYPWSMYLDN TFGSFQVSDF  360
CLDKPADLMD LFNNTGFDNN INFNLYEQSR EQEFNNLDLF SDSMIIDMVE GNNEEVRNNP  420
SISPTSSTAV SRTTSISSDM KDVGGWTSST K*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755132e-91HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016538325.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1U8E4U40.0A0A1U8E4U4_CAPAN; AP2-like ethylene-responsive transcription factor At1g16060
STRINGPGSC0003DMT4000707350.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91342227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.38e-98AP2 family protein