PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g08700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 468aa    MW: 51406.1 Da    PI: 5.4884
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g08700genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.2e-13291338355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 ++h e+Er+RR+++Ns+f  Lr+++P+       +++Ka+ L  Av YI++L+
  CA08g08700 291 MNHVEAERQRREKLNSRFYALRSVVPNV-----SRMDKASLLSDAVSYINQLK 338
                 589************************6.....4*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.6E-4831219IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.24E-17291349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.61E-15291341No hitNo description
PfamPF000103.6E-11292337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-16292348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-17294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00248414467No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MEQLMVSSSP MAPASLPPSL PADINQLPLG LQQMLQYVVK SQPEWWAYAI FWQKSNDDEG  60
KAFLAWGDGY FQESCAGSNN KGSGRSSGSG SSLHSQAQTE RKKVIRGIQA LMDGNGDNSP  120
VDDVDVTDPE WFYVMSLAGS FSAFDGTVLG KALGSGVFLW LTGSAQFEAF NTCERAKEAQ  180
IHGIQTLVCI PTTNGVLELG STHLIKQNLT LVQQVENLFL CCPSVQFLEE TICFADIGLV  240
TGLQQGDYNE EKFVENRQKQ QLPDSGKLKT VAKKRGRKPK GFVEDVNMVA MNHVEAERQR  300
REKLNSRFYA LRSVVPNVSR MDKASLLSDA VSYINQLKAR VDELESQLID SNNKKLKIIT  360
ESSSADNQST TTSPDDQVVI KANSTAAPAE VEVKIVGTDA MIRVQSENVD YPSAKLMNAL  420
QHLQMQVHHA SISTVNNLAI HDVVVRIPQG LSTEDELRTA LRSRLEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A8e-33312199192Transcription factor MYC3
4rqw_B8e-33312199192Transcription factor MYC3
4rs9_A8e-33312199192Transcription factor MYC3
4yz6_A8e-33312199192Transcription factor MYC3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016538248.10.0PREDICTED: transcription factor MYC4-like
TrEMBLA0A1U8DTB30.0A0A1U8DTB3_CAPAN; Uncharacterized protein
TrEMBLA0A2G2YYT30.0A0A2G2YYT3_CAPAN; transcription factor MYC4-like
STRINGPGSC0003DMT4000472200.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.18e-77bHLH family protein