PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g14210
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 145aa    MW: 15601.1 Da    PI: 10.4128
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g14210genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.93.9e-212473255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAaka++aa++ ++g
  CA07g14210 24 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAKAYDAAARDFRG 73
                7********.**********8...557**********************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.7E-382487IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-332481IPR001471AP2/ERF domain
PfamPF008471.4E-142473IPR001471AP2/ERF domain
CDDcd000181.35E-182481No hitNo description
PROSITE profilePS5103223.9862481IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-232482IPR016177DNA-binding domain
PRINTSPR003671.2E-112536IPR001471AP2/ERF domain
PRINTSPR003671.2E-114763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009536Cellular Componentplastid
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MALKSKVSSN GSENAKVNGV KEVHYRGVRK RPWGRYAAEI RDPGKKSRVW LGTFDTAEEA  60
AKAYDAAARD FRGPKAKTNF PSPFPLETLN QSPSNSSTLE SSSGETGVHA PMEVDLTRRL  120
GAVAPVFHQQ PTXGSSERSA GFAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-222481260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-222481563ATERF1
3gcc_A4e-222481563ATERF1
5wx9_A6e-221986977Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. May regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:12654868, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemical transient expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Not influenced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7896350.0AY789635.1 Capsicum annuum ethylene responsive element binding protein C1 mRNA, complete cds; leucoplast.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016580787.15e-93PREDICTED: ethylene-responsive transcription factor 4-like
SwissprotQ404772e-59ERF4_TOBAC; Ethylene-responsive transcription factor 4
TrEMBLA0A2G2Z3T21e-100A0A2G2Z3T2_CAPAN; Ethylene-responsive transcription factor 4
STRINGPGSC0003DMT4000689594e-60(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-29erf domain protein 9
Publications ? help Back to Top
  1. Ogata T, et al.
    Involvement of NtERF3 in the cell death signalling pathway mediated by SIPK/WIPK and WRKY1 in tobacco plants.
    Plant Biol (Stuttg), 2015. 17(5): p. 962-72
    [PMID:25996234]