PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g09560
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family FAR1
Protein Properties Length: 726aa    MW: 83663 Da    PI: 6.7517
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g09560genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1773.7e-2473164190
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                 ++Y+++A++ GFsvrk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke     ++w+v+++++ HnHel 
  CA07g09560  73 EYYSNFARKNGFSVRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIadgVAQWYVSQFSNIHNHELL 164
                 69********************8888.******************************************998766789*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.3E-2273164IPR004330FAR1 DNA binding domain
PfamPF105517.4E-23296388IPR018289MULE transposase domain
PROSITE profilePS5096610.064599634IPR007527Zinc finger, SWIM-type
PfamPF044341.4E-5608633IPR007527Zinc finger, SWIM-type
SMARTSM005750.0012609636IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MEITAAKPFN NIWIRRQQCP CGDWKCYIKA DGDEQGANVS QTTKSEATSS SSQDIVFTPY  60
VGQIFKGDDE AFEYYSNFAR KNGFSVRKAR STESQNLGIY RRDFVCYRSG FNQPRKKANV  120
EHPRDRKSVR CGCDAKLYLT KEIADGVAQW YVSQFSNIHN HELLEDDQVR LLPAYRKIQE  180
ADQERILLLS KAGFPVNRIV KVLELEKGVQ PGQLPFIEKD VRNFVRTCKK TVEENDALIT  240
EKRENDLLDL LEGCKASEQK DEGFVYSFTT DENGRVENIA WSYGHSRQAY SFFGDVVTFD  300
TTYRSITYNM IFGVWFGIDN HGNVLFLGCV LLQDETSQSF TWALQSFVRF MRGRQPQTIV  360
TDIDSGLRDA IASEMPNTKH VISIWQVLSK LSSWFSLPLG LQYPDFKSEF DVLCRLENVE  420
DFEHQWNQLV ARFGLGSDKH IALLLSYRAS WPSSYMRNFF LARTMMIEYW KLVETYMKNI  480
LSPQSSLLLF FEKVQNNYNC LTSLSLTCLV HDLMTNSAHF KPPQVGSASN VGSHKKEKQL  540
YMPAKTCLPV EEHSRSILTP YAFNIMQHEI MLSMQYAITE MANSSYLVRH YKKMEAECLV  600
IWIHEDEQVH CSCKEFEHSG IMCRHSIRVL VSKNYFQIPE KYFPLRWRLE SSLAPLDDSV  660
IQSSKNEYSQ VFHALCGSLY SESSISKQRF DYVNRELKQL LEHVQNMPSV DEVAVSSAPI  720
NVGEL*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016580466.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_016580467.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_016580469.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_016580470.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A2G2Z1J60.0A0A2G2Z1J6_CAPAN; Uncharacterized protein
STRINGXP_009624952.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75321927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]