PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g27850
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 206aa    MW: 22363.9 Da    PI: 6.9982
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g27850genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.91.7e-38151161101
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+ dC++apyf +e+ p+kfa++hk+FGasnv+kll+++p ++r da+ +++yeA+ar++dPvyG+v+ i++lqqq++ l++++ ++k
  CA06g27850  15 PCGACKFLRRKCVVDCIFAPYFNSEEgPSKFAAIHKVFGASNVSKLLHNVPVDDRCDAVVTIAYEAQARIKDPVYGCVANIFALQQQVAYLQSQVMQVK 113
                 7*********************998889*******************************************************************9999 PP

      DUF260  99 eel 101
                 ++l
  CA06g27850 114 AQL 116
                 875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.13114116IPR004883Lateral organ boundaries, LOB
PfamPF031953.1E-3815113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MASSNSSVTG GTGSPCGACK FLRRKCVVDC IFAPYFNSEE GPSKFAAIHK VFGASNVSKL  60
LHNVPVDDRC DAVVTIAYEA QARIKDPVYG CVANIFALQQ QVAYLQSQVM QVKAQLAQSL  120
INNSNNSYNP QWIINNNNNN VASSGQMTTS SSFPANYPNY YINVKSNSSP QSSSMESADH  180
YSDGHGMSMQ DIHSLDQFLY QPYTS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-118HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577444.11e-151PREDICTED: LOB domain-containing protein 16-like
SwissprotQ9SLB79e-68LBD16_ARATH; LOB domain-containing protein 16
TrEMBLM1BS161e-104M1BS16_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000516801e-103(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.19e-62lateral organ boundaries-domain 16