PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g25790

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 230aa MW: 26005.3 Da PI: 9.5638

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g25790	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.7	3e-41	52	151	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+kll ++p +r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael+++++ CA06g25790 52 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKLLMEVPVGQRADAANSLVYEANVRLRDPVYGCMGAISALQQQIQNLQAELNSIRA 150 7**********************************************************************************************9987 PP DUF260 100 e 100 e CA06g25790 151 E 151 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.256	51	152	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.9E-42	52	149	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MNRERMDEMG KKLKTEIIDA SNSQLNMQQL QMGRRHVLGP VAGGTTLNHV TPCAACKLLR 60 RRCAEECPFS PYFSPHEPHK FAAVHKVFGA SNVSKLLMEV PVGQRADAAN SLVYEANVRL 120 RDPVYGCMGA ISALQQQIQN LQAELNSIRA EILRYKYREA ANSLIIASIS TSVAPELPQA 180 PPXXXXXXXX HHLWWWFRRH HLLLLQFHLI CTHQLRLVWQ TLVPLPIIA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-44	42	159	1	118	LOB family transfactor Ramosa2.1
5ly0_B	1e-44	42	159	1	118	LOB family transfactor Ramosa2.1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00283	DAP	Transfer from AT2G30340	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	2e-93	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016576847.1	1e-132	PREDICTED: LOB domain-containing protein 15
Swissprot	Q9AT61	2e-70	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A2G2XZM8	1e-162	A0A2G2XZM8_CAPAN; LOB domain-containing protein 15
STRING	Solyc06g082430.1.1	1e-111	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	4e-73	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]