PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g22340
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family FAR1
Protein Properties Length: 881aa    MW: 100331 Da    PI: 6.5113
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g22340genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR134.66.4e-1164132190
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 +fY+eYA+++GF++r+ + ++        k +f C k g r+ + ++              C+a+l+v+++ ++kw+vtk ++eH+H+l+
  CA06g22340  64 NFYDEYARRLGFTTRVCQFNRL-------KTDFLCDKVGLRRVSGES--------------CDAMLRVELKGQNKWVVTKYVKEHSHSLV 132
                 6****************98876.......789*********998877..............**************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-764132IPR004330FAR1 DNA binding domain
PfamPF105512.3E-25270360IPR018289MULE transposase domain
PROSITE profilePS5096611.09548584IPR007527Zinc finger, SWIM-type
PfamPF044343.1E-9548581IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-6559586IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 881 aa     Download sequence    Send to blast
MNVEVIDVEE GKMHQQGGIA DDGDDEPSES REANVNGRSN ASDGDSIVEP QMGMVFLSED  60
QAKNFYDEYA RRLGFTTRVC QFNRLKTDFL CDKVGLRRVS GESCDAMLRV ELKGQNKWVV  120
TKYVKEHSHS LVYPNKVHYQ RLHKHFAVTK KNVTENNQGV GIVPSGVMYV SVDGNRIPVE  180
MNHGAKRTRP DELDQTVKNT AFQSFSPRHC NQRRTLGRDA QNLLDYFKKM QAENPGFYYA  240
IQLDEDNRMA NVFWADARSR NAYSHFCDAV ILDTMYRVNQ CRVPFAPLTG VNHHDQTILF  300
GCALLLDESE ATFVWLFKTF LAAMNDRAPV SIMTDRDTVI KSAVAQVFPE TRHCINKWNV  360
LRGGQDRMAH VCHMYPNFQV ELYNCINLTD TVEEFETYWE IILDKYDLKK NDWLLSIYNI  420
RHQWVPVYFR DTFVAAISPN QEYECSFFDG YVNQQITLPL FFRQYERALE NSLEKEIEAD  480
FDTICATPPL RTPSPMEKQA ATVYTKKIFL KFQEELVETF VYTANRIDGD GVISTFRVAK  540
FEDDQKAYIV SLNISELKAN CSCQMFECSG ILCRHILTVF TVNNILTLPS HYILKRWTIN  600
AKCGAESAEQ VHDTESMAQR YNSLCREAIR YAEDGAVSQE AYNAVLGALK EGGKKVALAK  660
IKVTKVSPPN SLVSGAGYDD RRTSISASEM TPLLWPRQDE MTKRFNLNDT GSPARAVADL  720
NAQRMAPVSL HHDDGHADNT VILPCLKSMT WVMENKTSAP ENRVAVINLK LQDYSRTPSR  780
ESEVKFQLSR ITLEPMLKSM AYISEQLSAP ANRVAVINLK LQDTETTSGE SEVKFQVSRD  840
TLGAMLRSMA YIREQLSNTV SFLGLFSMYH LFYLSILKTF *
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016578018.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A2G2ZDK90.0A0A2G2ZDK9_CAPAN; Protein FAR1-RELATED SEQUENCE 3
STRINGXP_009776131.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]