PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g20470
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NF-YC
Protein Properties Length: 205aa    MW: 22228.2 Da    PI: 4.6013
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g20470genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC166.53.3e-5211024102
       NF-YC   4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                 +fw++q   ie+atdfknh+lPlarikki+kadedv+misae+Pvl++kace+fi eltlrswlhaeenkrrtl+++diaaa++rtd+fdflvdi+prd
  CA06g20470   1 MFWNYQrqeIEQATDFKNHQLPLARIKKIMKADEDVRMISAETPVLFAKACEIFIQELTLRSWLHAEENKRRTLQQNDIAAAISRTDTFDFLVDIIPRD 99 
                 6999887789***************************************************************************************** PP

       NF-YC 100 elk 102
                 e+k
  CA06g20470 100 EVK 102
                 875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.19E-31792IPR009072Histone-fold
PfamPF008082.5E-202083IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.0E-372198IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MFWNYQRQEI EQATDFKNHQ LPLARIKKIM KADEDVRMIS AETPVLFAKA CEIFIQELTL  60
RSWLHAEENK RRTLQQNDIA AAISRTDTFD FLVDIIPRDE VKDEGVGLGL APGGVPYYYP  120
PLGQPAPGGV ILGRPAVPAG AVPGVVPGAV PDVVPGSVPG ADPSMYVPHL PFQVWQSMWQ  180
TSEDHSYPSG GGSSSGQATD DGQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-52698395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016576950.11e-150PREDICTED: nuclear transcription factor Y subunit C-1-like isoform X2
SwissprotQ9SMP02e-80NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLA0A1U8H0P61e-149A0A1U8H0P6_CAPAN; nuclear transcription factor Y subunit C-1-like isoform X2
STRINGSolyc06g072040.1.14e-98(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40872143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.15e-67nuclear factor Y, subunit C1
Publications ? help Back to Top
  1. Shi H,Chan ZL
    AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway.
    Plant Signal Behav, 2015.
    [PMID:24831307]
  2. Shi H,Chan ZL
    AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway.
    Plant Signal Behav, 2014. 9(7): p. e29109
    [PMID:25763489]
  3. Tang Y, et al.
    Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
    Mol Plant, 2017. 10(2): p. 260-273
    [PMID:27876642]
  4. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]