PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g20440
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NF-YC
Protein Properties Length: 191aa    MW: 20903.7 Da    PI: 5.0138
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g20440genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC174.98.5e-5511024102
       NF-YC   4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                 +fw++q   ie+a+dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflvdivprd
  CA06g20440   1 MFWNYQrqeIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRD 99 
                 6999887789***************************************************************************************** PP

       NF-YC 100 elk 102
                 e+k
  CA06g20440 100 EVK 102
                 975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.35E-32692IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.7E-371284IPR009072Histone-fold
PfamPF008085.4E-212083IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MFWNYQRQEI EQANDFKNHQ LPLARIKKIM KADEDVRMIS AEAPVLFAKA CELFILELTI  60
RSWLHAEENK RRTLQKNDIA AAITRTDIFD FLVDIVPRDE VKDEGVGLGL GPGIVGPTAS  120
GVPYYYPPLG QPAPGGVMLG RPAVPGVDPS MYVHPPPSQA WQSVWQTSEE HSYPSGGGSS  180
SGQGNVDGQM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-55698395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17076RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016578216.11e-141PREDICTED: nuclear transcription factor Y subunit C-1-like isoform X2
SwissprotQ9SMP01e-97NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLA0A2G2WL601e-140A0A2G2WL60_CAPBA; Nuclear transcription factor Y subunit C-4
TrEMBLA0A2G3CA041e-140A0A2G3CA04_CAPCH; Nuclear transcription factor Y subunit C-4
STRINGSolyc06g072040.1.11e-125(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40872143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.14e-95nuclear factor Y, subunit C1
Publications ? help Back to Top
  1. Shi H,Chan ZL
    AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway.
    Plant Signal Behav, 2015.
    [PMID:24831307]
  2. Shi H,Chan ZL
    AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway.
    Plant Signal Behav, 2014. 9(7): p. e29109
    [PMID:25763489]
  3. Tang Y, et al.
    Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
    Mol Plant, 2017. 10(2): p. 260-273
    [PMID:27876642]
  4. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]