PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g20010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 180aa    MW: 19571.9 Da    PI: 7.2018
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g20010genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260140.17.3e-4410108199
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll++l +++reda+++l+yeAear+rdPvyG+v+ i+ lq+q+e+l++el+++++
  CA06g20010  10 PCAACKFLRRKCLPGCIFAPYFPPEEPHKFANVHKIFGASNVSKLLNELLPHQREDAVNTLAYEAEARVRDPVYGCVSAITFLQRQVERLQKELDAANA 108
                 7*********************************************************************************************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.2959110IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-4210107IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MASSSCYNSP CAACKFLRRK CLPGCIFAPY FPPEEPHKFA NVHKIFGASN VSKLLNELLP  60
HQREDAVNTL AYEAEARVRD PVYGCVSAIT FLQRQVERLQ KELDAANADL MRYASGNDMS  120
SAPLIGPHHQ QEIGSTLHNM ALSRRMGYDH HGGGYFPYSP SSWNDQNPSG GGGGGGENV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00581DAPTransfer from AT5G63090Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016549822.11e-126PREDICTED: protein LATERAL ORGAN BOUNDARIES-like
SwissprotQ9FML47e-73LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLK4C8N81e-102K4C8N8_SOLLC; Uncharacterized protein
STRINGSolyc06g071660.1.11e-101(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.43e-74LBD family protein