PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g17510
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 226aa    MW: 25093.5 Da    PI: 9.6928
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g17510genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.2e-2098147255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa a+++a++k++g
  CA06g17510  98 QYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFHTAEDAAVAYDEAALKFKG 147
                 69*******.**********94....45************************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.1E-3397156IPR001471AP2/ERF domain
PfamPF008474.7E-1298147IPR001471AP2/ERF domain
PROSITE profilePS5103224.4698155IPR001471AP2/ERF domain
CDDcd000183.59E-3198156No hitNo description
SuperFamilySSF541713.07E-2298156IPR016177DNA-binding domain
SMARTSM003802.7E-3798161IPR001471AP2/ERF domain
PRINTSPR003672.8E-1199110IPR001471AP2/ERF domain
PRINTSPR003672.8E-11121137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MNRIRHGKRA YESEEEKDSN NHMYSAARSE HDMSTMVAAL SQVMGNKSTN TNSSSSSASS  60
SVHHTPLTLA HQSSSTTTAA MQSQPQLNQQ QGNERRRQYR GVRQRPWGKW AAEIRDPKKA  120
ARVWLGTFHT AEDAAVAYDE AALKFKGNKA KLNFPERVQC KTDQFGTTYL ITASHQQHQF  180
PASNFLSNYN SQFGSNDNNA DDLNFGVAPS FYHPSAGTVV DSKYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2597158163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016578393.11e-163PREDICTED: ethylene-responsive transcription factor ERF114-like isoform X2
SwissprotQ9FH544e-49EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A1U8HB761e-161A0A1U8HB76_CAPAN; Ethylene-responsive transcription factor
TrEMBLA0A2G2XZQ31e-161A0A2G2XZQ3_CAPAN; ethylene-responsive transcription factor ERF114-like isoform X2
STRINGSolyc06g068830.1.12e-94(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.13e-27ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]