PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g17260
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family FAR1
Protein Properties Length: 738aa    MW: 84886 Da    PI: 5.451
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g17260genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1712.7e-22129212189
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                 ++Yn YAke+GF +r+++s ++++++e   + ++C++eg+++ ++ +     ++r+etrtgC a++++++ ++++w+v++++leHnH +
  CA06g17260 129 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTMKEAN-----SRRKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHLF 212
                 69****************************************99888.....8999*******************************77 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.7E-20129212IPR004330FAR1 DNA binding domain
PfamPF105512.4E-26331417IPR018289MULE transposase domain
PROSITE profilePS509669.31618654IPR007527Zinc finger, SWIM-type
PfamPF044349.7E-5625652IPR007527Zinc finger, SWIM-type
SMARTSM005751.8E-5629656IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MEEGLGISEQ LPEDEGGDNE AVGVEVFDIT CNGIESDSDQ VRNIETTAGQ ILEFESHETE  60
RNCEHVLNFE SGDPRDNSHQ LLELHSDGLE DPRCGNTTIL DGHTGSSLGK SCPPLAVGME  120
FESYEDAYNY YNCYAKELGF AIRVKSSWTK RNSKEKRGAV LCCNCEGFKT MKEANSRRKE  180
TRTGCLAMIR LRLVESNRWR VDEVKLEHNH LFDPERMQNS KSHKKMDAGV KRKLEPAVDV  240
EVCTIKLYRT PAVETPGYGN SDERVSSQIY GSTRLNLKEG DTQVIYSFFS RMQLMKPNFF  300
YIMDLNDEGY LKNVFWIESR SRAAYAYFGD VVVVDNTCLS KKYDIPLLAF FGLNHHNQTL  360
LLGCSLLADE SFETYVWLLR AWLSCMSGRP PQTIITDRCK ALQNAVSEVF PRAQHRLNLS  420
IILDSIVDTV GEMGGSEVFH EVLYNTVYSS LKVDEFEVAW EEMTQQFGCR GYGWLQSLYE  480
DRERWVPIYM KDTFLAGISI DDQHGEFMRP FFDGFVHKQT NLREFFDIYD FVLQKMHQKE  540
VLCDTESREF SPDLRTRCSY ELQLSKLYTK EIFLKFQDEM VLMSNCSGIA QIHVNGPIIT  600
YIVKERGVQG ETRGARDFEV TYDKLGVEVR CMCNCFNFKG YLCRHALSVL NYNGIEEIPN  660
HYILTRWRKN FKHLYASELG SSNIDISNPV QRFDHLHRRA MQVVDEGMTS QDHYMVAQQA  720
FKESLIKFHL AADKHVS*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356225.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 8-like
SwissprotQ9S7930.0FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBLA0A2G2ZBV00.0A0A2G2ZBV0_CAPAN; Protein FAR1-RELATED SEQUENCE 8
STRINGSolyc06g068210.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13471970
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.10.0FAR1-related sequence 8
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]