PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g13590
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family G2-like
Protein Properties Length: 338aa    MW: 37657.8 Da    PI: 8.9638
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g13590genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.23.2e-32142195255
     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  CA06g13590 142 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 195
                 9****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.25E-15138195IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-28140195IPR009057Homeodomain-like
TIGRFAMsTIGR015577.0E-24142195IPR006447Myb domain, plants
PfamPF002494.4E-7143194IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
ALESRNSKSD SNSNNSSSLF ELSLSNIPNK PSPPHQLINT TSHFHPTIQN THTNFIHQSL  60
QQNQELSFLR PIRGIPVYHQ NPPPLPSPSI PVSHHNYPIF AHQTFDNTST TAATLPIHSS  120
GSGLMRSRFL SRFPAKRTMR APRMRWTSSL HARFVHAVEL LGGHERATPK SVLELMDVKD  180
LTLAHVKSHL QMYRTVKTTD RAAVPASSGQ SEVFDNGSSG DNSEDLMPDM ENSRKSADLL  240
SDQHAGRNNM HLQEKDYHGL WSNSSSRESW QLHGKHGDYP GNMASLERTE KNQHKDMEAN  300
AKCLSYDRIS GEVSSSSITE TSPKKPNLEF TLGRPSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-16143197458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-16143197458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-16143197458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-16143197458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-16143197458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-16143197458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-16143197458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-16143197458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754455e-48HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016575001.10.0PREDICTED: probable transcription factor KAN2 isoform X1
SwissprotQ9C6164e-65KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A1U8GUS80.0A0A1U8GUS8_CAPAN; probable transcription factor KAN2 isoform X1
TrEMBLA0A2G2ZAW80.0A0A2G2ZAW8_CAPAN; Putative transcription factor KAN4
STRINGXP_009615772.11e-167(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27382255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.14e-67G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]