PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g13560
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family AP2
Protein Properties Length: 383aa    MW: 43667 Da    PI: 9.852
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g13560genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.93.4e-1560119155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a+ k++g
  CA06g13560  60 SRFRGVSRHRWTGRYEAHLWDkGSWNVtqkKKgKQVYLGAYDEEESAARAYDLAAIKYWG 119
                 789******************888855555447*************************98 PP

2AP252.41.3e-16162213155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  CA06g13560 162 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 213
                 89****99**********99966...3.6*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.37E-1960129No hitNo description
PfamPF008475.9E-1260119IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-1660129IPR016177DNA-binding domain
SMARTSM003801.2E-2461133IPR001471AP2/ERF domain
PROSITE profilePS5103219.41461127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-1561128IPR001471AP2/ERF domain
PRINTSPR003672.7E-56273IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-18162223IPR016177DNA-binding domain
CDDcd000183.25E-25162223No hitNo description
PfamPF008474.7E-12162213IPR001471AP2/ERF domain
SMARTSM003802.7E-26163227IPR001471AP2/ERF domain
PROSITE profilePS5103218.953163221IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-18163222IPR001471AP2/ERF domain
PRINTSPR003672.7E-5203223IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006110Biological Processregulation of glycolytic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0019432Biological Processtriglyceride biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MSMVDYDIPE TTKRVKRRRR SPPAVAVLND NIGQQADQQK MDSSKVDQNI AHTPTVKRSS  60
RFRGVSRHRW TGRYEAHLWD KGSWNVTQKK KGKQVYLGAY DEEESAARAY DLAAIKYWGT  120
STFINFPISD YEKEIEIMQT VTKEEYLASL RRRSSGFARG VSKYRGVARH HHNGRWEARI  180
GRVFGNKYLY LGTYSTQEEA ARAYDIAAIE YRGINAVTNF DLSTYIRWLK PGVNTQMAFQ  240
ELRSENQAIQ TNTNDMINPV NDPQFSFGSN YFATTRETLP PIPQSQEPIE RKMPLSPKPS  300
SPTALSLLLR SSMYRELVEK NSNTSASEKD KPNMKNKQQA NTEDDFVFYT SDKLPALASM  360
DKGTTSSPLC DRAGQSFWDV MP*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577062.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700 isoform X1
TrEMBLA0A1U8H0S80.0A0A1U8H0S8_CAPAN; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A2G2ZAH80.0A0A2G2ZAH8_CAPAN; AP2-like ethylene-responsive transcription factor At1g79700 isoform X1
TrEMBLA0A2G3C7U00.0A0A2G3C7U0_CAPCH; Ethylene-responsive transcription factor WRI1
STRINGSolyc06g066390.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34402145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-94AP2 family protein