PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g14230
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 236aa    MW: 26223.1 Da    PI: 9.9291
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g14230genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.6e-18147197255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr+++ +g+++AeIrdps   k  r++lg+f+t  +Aa+a++ a+ k++g
  CA05g14230 147 NYRGVRRRP-WGKYAAEIRDPSR--KGSRIWLGTFDTDVDAARAYDCAAFKMRG 197
                 59*******.**********854..34**********99*************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.18E-32146205No hitNo description
PROSITE profilePS5103224.605147205IPR001471AP2/ERF domain
PfamPF008471.1E-12147197IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-23147206IPR016177DNA-binding domain
SMARTSM003802.6E-38147211IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-32147206IPR001471AP2/ERF domain
PRINTSPR003674.4E-13148159IPR001471AP2/ERF domain
PRINTSPR003674.4E-13187207IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MSPVFITSIV KTEPSTSTSL SDSPNSSYLN EPNSPISRYF NLHSDFPEFK IDSDIILSPT  60
YSSAVSSSTK ENKNNELKTA FKTDSDNILS PTYNSSAVSS STNKNKNNEH KNAFQTDADN  120
ILNPTHDNNC AISSSIKENK STETKKNYRG VRRRPWGKYA AEIRDPSRKG SRIWLGTFDT  180
DVDAARAYDC AAFKMRGRKA VLNFPLDAGK SGAPANIGRR RRRDSKMELM EVLNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-27146206161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7896370.0AY789637.1 Capsicum annuum ethylene responsive element binding protein C3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311922.11e-172ethylene-responsive transcription factor 5-like
TrEMBLA0A1U8GQ261e-171A0A1U8GQ26_CAPAN; ethylene-responsive transcription factor 5-like
STRINGXP_009597659.11e-61(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.18e-46ERF family protein