PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g12710
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 594aa    MW: 66924.8 Da    PI: 6.6408
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g12710genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS238.92.1e-732085882374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                 ++lL  cA a+++g+l+++q+l   l+el+s +gd+++Rlaa  ++AL + l+   s+s ++++   ++ +++n +   ++l  f+++sP++++ + +a
  CA05g12710 208 EQLLNPCAAAITAGNLNRVQHLFYVLQELSSINGDANHRLAARGLQALTHYLSTpcSTSLISASAGITTFTSTNPKFFKNSLINFNDISPWFRIPNSIA 306
                 689**************************************************9755556667778888888888888888888*************** PP

        GRAS  99 NqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAeelgvpfefnvlvak 184
                 N+ Il+ + ++   + +Hi+D+++s+G+QWp+Ll++L+ Rp ++pp +R+T++ +  ++               +   +L  fA+e+++++++n l   
  CA05g12710 307 NSSILQILLKHdssRNLHILDIGVSHGVQWPTLLEELTHRPgGPPPLVRLTVITPTMENdqqrhnpfvVGPGGYNFTVQLLAFAKEININLQINRLENY 405
                 ******99877666899************************55566*******99766667777777766667788899****************9888 PP

        GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..ns.esFlerflealeyysalfdsleaklp.res 279
                  l++l+ + ++ +p+E l+++ +++lh+l    ++ ++er+e+L+++ksl+Pk +v++e+++d+  ns ++F+++f + +ey ++++ds+++ +  res
  CA05g12710 406 PLQNLDSQLINSSPDEILVICAQFRLHNLK---HQNPDERTELLRILKSLEPKGLVLSENNMDCscNScSNFATGFGRRVEYLWKFLDSTSVAYKgRES 501
                 *****************************8...66666778********************8875454369*******************887640344 PP

        GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 e r++     ++ e+ +++++ g++    +e++ekW er++++GF    ++ ++ + a++ll+k++ ++++rv+ ++g++ l Wk++p+ ++S W+
  CA05g12710 502 ERRRM-----MEGEAAKALTNMGEM----NERKEKWCERMRTVGFAWEMFGANVIDRARALLKKYDnNWEMRVDAQDGCVDLWWKGEPVSFCSLWK 588
                 44444.....555699999999998....78888********************************9999*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.073181567IPR005202Transcription factor GRAS
PfamPF035147.3E-71208588IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MTIDEPEPDP TFDPISEWLA DPLSYIPSFL DEPYSLNDFY EESWWSPSES INQEMHINNN  60
NSLTSFDTSL IVTHTSATPL EPIIASHLXF DTSLIVTHTS ATPLEPIIAS HLPPLDSPRK  120
RKGNDSDYNF EASRKNQNPR IYDTDDGEAI VVERVTTRKT AGHKKATHKS TGNNGXERVT  180
TRKTAGHKKA THKSTGNNGN NREGRWAEQL LNPCAAAITA GNLNRVQHLF YVLQELSSIN  240
GDANHRLAAR GLQALTHYLS TPCSTSLISA SAGITTFTST NPKFFKNSLI NFNDISPWFR  300
IPNSIANSSI LQILLKHDSS RNLHILDIGV SHGVQWPTLL EELTHRPGGP PPLVRLTVIT  360
PTMENDQQRH NPFVVGPGGY NFTVQLLAFA KEININLQIN RLENYPLQNL DSQLINSSPD  420
EILVICAQFR LHNLKHQNPD ERTELLRILK SLEPKGLVLS ENNMDCSCNS CSNFATGFGR  480
RVEYLWKFLD STSVAYKGRE SERRRMMEGE AAKALTNMGE MNERKEKWCE RMRTVGFAWE  540
MFGANVIDRA RALLKKYDNN WEMRVDAQDG CVDLWWKGEP VSFCSLWKID PTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-3420458884473Protein SHORT-ROOT
5b3h_B2e-3420458830419Protein SHORT-ROOT
5b3h_E2e-3420458830419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016554867.10.0PREDICTED: nodulation-signaling pathway 1 protein-like
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A2G2ZII40.0A0A2G2ZII4_CAPAN; Nodulation-signaling pathway 1 protein
STRINGXP_009594760.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49492139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-131GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]