PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g12700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 567aa    MW: 64130.2 Da    PI: 6.5097
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g12700genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS237.17.8e-731815612374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                 ++lL  cA a+++g+l+++q+l   l+el+s +gd+++Rlaa  ++AL + l+   s+s ++++   ++ +++n +   ++l  f+++sP++++ + +a
  CA05g12700 181 EQLLNPCAAAITAGNLNRVQHLFYVLQELSSLNGDANHRLAARGLQALTHYLSTpcSTSLISASAGITTFTSTNPKFFKNSLINFNDISPWFRIPNSIA 279
                 689**************************************************9755556667778888888888888888888*************** PP

        GRAS  99 NqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAeelgvpfefnvlvak 184
                 N+ Il+ + ++   + +Hi+D+++s+G+QWp+Ll++L+ Rp ++pp +R+T++ +  ++               +   +L  fA+e+++++++n l   
  CA05g12700 280 NSSILQILLKHdssRNLHILDIGVSHGVQWPTLLEELTHRPgGPPPLVRLTVITPTMENdqqrhnpfvVGPGGYNFTVQLLAFAKEININLQINRLENY 378
                 ******99877666899************************55566*******99766667777777766667788899****************9888 PP

        GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..ns.esFlerflealeyysalfdsleaklp.res 279
                  l++l+ + ++ +p+E l+++ +++lh+l    ++ ++er+e+L+++ksl+Pk +v++e+++d+  ns ++F+++f + +ey ++++ds+++ +  res
  CA05g12700 379 PLQNLDSQLINSSPDEILVICAQFRLHNLK---HQNPDERTELLRILKSLEPKGLVLSENNMDCscNScSDFATGFGRRVEYLWKFLDSTSVAYKgRES 474
                 *****************************8...66666778********************8875454369*******************887640344 PP

        GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 e r++     ++ e+ ++++  g++    +e++ekW +r++++GF    ++ ++ + a++ll+k++ ++++rv+ ++g++ l Wk++p+ ++S W+
  CA05g12700 475 ERRRM-----MEGEAAKALTSMGEM----NERKEKWCKRMRTVGFAWEMFGANVIDRARALLKKYDnNWEMRVDAQDGCVDLWWKGEPVSFCSLWK 561
                 44444.....555689999999998....78888********************************9999*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.995154540IPR005202Transcription factor GRAS
PfamPF035142.7E-70181561IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MIKHQHQAIL SHYPSSSICN TMTIDEPEPD PTFDPISEWL ADPLSYIPSF LDEPYSLNDF  60
YEESWWSPSE SINQEMHINN NNSLTSFDTS LIVTHTSATP LEPIIASHLP PLDSPRKRKG  120
NDSDYNFEAS RKNQNPRIYD TDDGEAIVVE RVTTRKTAGH KKATHKSTGN NGNNREGRWA  180
EQLLNPCAAA ITAGNLNRVQ HLFYVLQELS SLNGDANHRL AARGLQALTH YLSTPCSTSL  240
ISASAGITTF TSTNPKFFKN SLINFNDISP WFRIPNSIAN SSILQILLKH DSSRNLHILD  300
IGVSHGVQWP TLLEELTHRP GGPPPLVRLT VITPTMENDQ QRHNPFVVGP GGYNFTVQLL  360
AFAKEININL QINRLENYPL QNLDSQLINS SPDEILVICA QFRLHNLKHQ NPDERTELLR  420
ILKSLEPKGL VLSENNMDCS CNSCSDFATG FGRRVEYLWK FLDSTSVAYK GRESERRRMM  480
EGEAAKALTS MGEMNERKEK WCKRMRTVGF AWEMFGANVI DRARALLKKY DNNWEMRVDA  540
QDGCVDLWWK GEPVSFCSLW KIDPTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-3417756184473Protein SHORT-ROOT
5b3h_B6e-3517756130419Protein SHORT-ROOT
5b3h_E6e-3517756130419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016554867.10.0PREDICTED: nodulation-signaling pathway 1 protein-like
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A2G2ZIH00.0A0A2G2ZIH0_CAPAN; Nodulation-signaling pathway 1 protein
STRINGXP_009594760.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49492139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-142GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]