PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g11250
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 188aa    MW: 21638.4 Da    PI: 10.3134
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g11250genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.5e-1861112155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 ++y+GVr+++ +g+++AeIrdp   + k +r +lg++ ++++Aa a+++a+ kl+g
  CA05g11250  61 KKYRGVRRRP-WGKFAAEIRDP---KrKGARLWLGTYESPKDAALAYDRAAFKLRG 112
                 59********.**********8...4334*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.69E-3061122No hitNo description
PfamPF008476.1E-1362112IPR001471AP2/ERF domain
PROSITE profilePS5103224.14462120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3062121IPR001471AP2/ERF domain
SMARTSM003803.8E-3562126IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2362121IPR016177DNA-binding domain
PRINTSPR003672.4E-136374IPR001471AP2/ERF domain
PRINTSPR003672.4E-13102122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MHQENSREFD LSILDLELEH QFNSSNSDSI SDNLSVKKWE KIDENGDSMP CASSQVQNNW  60
KKYRGVRRRP WGKFAAEIRD PKRKGARLWL GTYESPKDAA LAYDRAAFKL RGTRALLNFP  120
HLIDTNVALL NRVRPKRRSH SPEIKEEEEI PSPKRRNAQL INSLAKVNLN NHSIIQMFGV  180
TNYAFHP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-3061126469ATERF1
3gcc_A7e-3061126469ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135139KRRSH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016574685.11e-138PREDICTED: ethylene-responsive transcription factor 13-like
TrEMBLA0A1U8GU761e-136A0A1U8GU76_CAPAN; Ethylene-responsive transcription factor 1
TrEMBLA0A2G2ZIP21e-136A0A2G2ZIP2_CAPAN; ethylene-responsive transcription factor 13-like
STRINGPGSC0003DMT4000180851e-96(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.14e-38ethylene-responsive element binding factor 13