PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g04400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family AP2
Protein Properties Length: 752aa    MW: 83306.8 Da    PI: 9.6741
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g04400genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.84.1e-11120165352
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                 ++GVr +k +g +vAe +dp     + +r++lg+f t eeA +a+ a  ++
  CA05g04400 120 FSGVRKRK-QGEYVAEKWDPI----TkRRVWLGTFNTVEEATEAYLAKQRE 165
                 89***999.9******99962....35******************998776 PP

2AP234.17e-11291330447
         AP2   4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaai 47 
                  GVr  k +gr+ AeIrdp    +r k+++lg+f+t eeA +a+ 
  CA05g04400 291 LGVRKQK-NGRYGAEIRDP----IRhKNVWLGTFDTVEEASQACL 330
                 69**888.8*********7....357**************99975 PP

3AP226.51.6e-08575620251
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaark 51 
                 ++ GV+ +k +g++ +eI  p    ++ k+++lg+f t eeA k +   ++
  CA05g04400 575 RIVGVHKNK-WGKYTSEIINP----ISkKKIWLGTFSTYEEASKTYQSKKL 620
                 789***999.*******9996....246***************98866665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.68E-14118159No hitNo description
PfamPF008471.8E-7119165IPR001471AP2/ERF domain
SMARTSM003801.3E-7119180IPR001471AP2/ERF domain
PROSITE profilePS5103214.131119177IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-14119168IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-11120171IPR016177DNA-binding domain
PROSITE profilePS5103213.301289352IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-9290331IPR016177DNA-binding domain
SMARTSM003802.9E-5291358IPR001471AP2/ERF domain
CDDcd000184.80E-13292328No hitNo description
PfamPF008471.0E-4292330IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-12292329IPR001471AP2/ERF domain
PfamPF008472.2E-4574619IPR001471AP2/ERF domain
PROSITE profilePS5103212.866575634IPR001471AP2/ERF domain
SMARTSM003801.2E-4575629IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-10576623IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-11578622IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MEPERAIAIE NVEENHCPVY AHHTFDKMPS SNSTYRSVAV GERSYSTVLG LQHLQHTANP  60
ITKKGVLFGT SGTAEVASEG SFDCAHHVLD EMTSSNSTNK TAAAEISDSA VLNLKYLTNF  120
SGVRKRKQGE YVAEKWDPIT KRRVWLGTFN TVEEATEAYL AKQREFANAH HMFDDMPSSN  180
SINKTAARSA AAESANAVER DRAVHGRTLF IKEVSFRDKT PSLGAELPSM GKLRKKDPFK  240
KKKVCKNFNS NIHESKKPIN VMNQGKEPVN CVESDRCNTV RRNRKAKTGL LGVRKQKNGR  300
YGAEIRDPIR HKNVWLGTFD TVEEASQACL SKKAEFDMLS QGKKKNKPTN YDQTLPESSA  360
GASLFVANGQ TLHAANVGRN KENKPKNCDQ IQPGSSVGAS LFVANYQTLH AANVGRNKEN  420
EPKNCDQIQS ESSVGVSLFV ANDQTLHVAN VDRNKEDEPK NCDQIQPELS VGALLFVAND  480
QTLHAANVGR NKENKPKNCD QIQPGSSVGA SLFVANDQTL LAANVGRNKV NKPKNCGLTQ  540
PGSSVRVSLS MANDQTLNAA NVSRNEKMDS PKTTRIVGVH KNKWGKYTSE IINPISKKKI  600
WLGTFSTYEE ASKTYQSKKL EFKKLVKPKK CDKKIHSTSK EKQVGKEKFG NVKSDHVNYE  660
RFQPESAVKF DILRSKEAEL QSKMPVDLST EEKQGGQEDA DMWTGQWVKL PNGKEVNFSL  720
KLGLPIIDSY GSLLGEFSSL DDLRIYDESI Y*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016572339.10.0PREDICTED: uncharacterized protein LOC107870354
TrEMBLA0A2G2ZGI60.0A0A2G2ZGI6_CAPAN; Ethylene-responsive transcription factor
STRINGSolyc04g009450.1.11e-106(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1658755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.22e-13ERF family protein