PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g03080
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bZIP
Protein Properties Length: 376aa    MW: 42507.2 Da    PI: 6.7179
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g03080genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.97e-1188125542
                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 
                 k+ rr+++NReAAr+sR+RKka++++Le+   +L +  
  CA05g03080  88 KVLRRLAQNREAARKSRLRKKAYVQQLENSKLKLIQLE 125
                 788*************************8655555444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.5E-584144IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.80686130IPR004827Basic-leucine zipper domain
PfamPF001701.9E-788119IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.49E-688128No hitNo description
Gene3DG3DSA:1.20.5.1705.4E-790132No hitNo description
PROSITE patternPS00036091106IPR004827Basic-leucine zipper domain
PfamPF141445.0E-30175250IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MNSSTYTQFV ASRRMGICEP LHQIGMWDDF NASCPSTSAT MILEVEKCLE EQIPIMEKRL  60
DNEIEDTSHG TVGTSNRYEA ETSKPIEKVL RRLAQNREAA RKSRLRKKAY VQQLENSKLK  120
LIQLEQELER ARKQGLYVGG GLDASQLSYS GTASSGTAAF DTEYGQWVEE QNRQTNDLRN  180
ALYHSQISEA DLRVIVDGCL NHYSNLFRIK ATAAKDDVLY IMSGMWKTSA ERFFMWIGGF  240
RPSELLKVLT PHLQLLTEQQ LREVCNLTQS CQQAEDALSQ GMVKLHQILA EAIAAGRLGE  300
GNYSLPQMGP AIEKLEALVR FVNQQADHLR QETLQQMSRI LNTHQAAQGF LALGEYFERL  360
RVLSSQWATR LREPA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00642SELEXTransfer from LOC107771743Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankS738260.0S73826.1 mas-binding factor MBF2=transcription factor TGA1a homolog [Solanum tuberosum=potatoes, root, mRNA, 1477 nt].
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016572116.10.0PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A
RefseqXP_016572117.10.0PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A
SwissprotP142320.0TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBLA0A1U8GLI30.0A0A1U8GLI3_CAPAN; Transcription factor TGA7
TrEMBLA0A2G2X9V90.0A0A2G2X9V9_CAPBA; Transcription factor TGA7
TrEMBLA0A2G2ZFS30.0A0A2G2ZFS3_CAPAN; TGACG-sequence-specific DNA-binding protein TGA-1A
STRINGSolyc04g011670.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7802497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.21e-149TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J
    A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems.
    Plant Mol. Biol., 2000. 42(5): p. 679-88
    [PMID:10809441]
  2. Johnson C,Boden E,Desai M,Pascuzzi P,Arias J
    In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor.
    Plant J., 2001. 28(2): p. 237-43
    [PMID:11722767]
  3. Katagiri F,Seipel K,Chua NH
    Identification of a novel dimer stabilization region in a plant bZIP transcription activator.
    Mol. Cell. Biol., 1992. 12(11): p. 4809-16
    [PMID:1406663]
  4. Miao ZH,Lam E
    Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants.
    Plant J., 1995. 7(6): p. 887-96
    [PMID:7599649]
  5. Pascuzzi P,Hamilton D,Bodily K,Arias J
    Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor.
    J. Biol. Chem., 1998. 273(41): p. 26631-7
    [PMID:9756903]