PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g02590
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 359aa    MW: 39727.3 Da    PI: 6.2442
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g02590genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2681.7e-21119168255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa+a+++a++k++g
  CA05g02590 119 RYRGVRQRP-WGKWAAEIRDPY----KaTRVWLGTFDTAEDAARAYDEAALKFRG 168
                 7********.**********76....35*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.1E-39119182IPR001471AP2/ERF domain
PROSITE profilePS5103225.475119176IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-23119177IPR016177DNA-binding domain
PfamPF008473.1E-14119168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-33119177IPR001471AP2/ERF domain
PRINTSPR003673.4E-12120131IPR001471AP2/ERF domain
CDDcd000181.17E-29127178No hitNo description
PRINTSPR003673.4E-12142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MFSGNINREE EMSVMVSALT RVITGEDRIL NQENNNSDNI IIGSSSLNEF SGGVGEKRGR  60
EEHQYFLSDI SSSSGGEDSS NSKTIASNTP TKESTFIYIT PTYDHNTTNI IDYNQPRRRY  120
RGVRQRPWGK WAAEIRDPYK ATRVWLGTFD TAEDAARAYD EAALKFRGSK AKLNFPENVR  180
LLPTSSTPRQ NDVGNTGHPM EKQFLAGTFP KDPMENNTNN VEFLTDTFPK NSMGNTHVSS  240
IVSPDDSPNT LSTMSFFPSS NPIVHTQLPN SNINPPFFLN DDFQMVHSSS SLLNQSMFST  300
TFQYSSSSSS SSSSSSSRVP FVPNMYFHGG SQRTSQSSEC DFRATSSDSA HHPSSSSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-25118179163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU8562511e-133CU856251.8 S.lycopersicum DNA sequence from clone LE_HBa-70F1 on chromosome 4, complete sequence.
GenBankHG9755161e-133HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016554386.10.0PREDICTED: ethylene-responsive transcription factor ERF110-like
TrEMBLA0A1U8F6T30.0A0A1U8F6T3_CAPAN; Ethylene-responsive transcription factor 4
TrEMBLA0A2G2ZFP00.0A0A2G2ZFP0_CAPAN; ethylene-responsive transcription factor ERF110-like
STRINGPGSC0003DMT4000606591e-162(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.16e-22ERF family protein