PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g01840
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 329aa    MW: 37461.3 Da    PI: 4.7042
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g01840genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.9e-17209259255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y GVr ++ +g+++AeIrd + ng   r++lg+f t eeAa a+++a++ ++g
  CA05g01840 209 HYIGVRKRP-WGKYAAEIRDSTRNG--IRVWLGTFNTGEEAALAYDQAALTMRG 259
                 799******.**********44465..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.20E-27208269No hitNo description
SMARTSM003802.5E-34209273IPR001471AP2/ERF domain
PfamPF008474.5E-13209259IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-21209269IPR016177DNA-binding domain
PROSITE profilePS5103221.47209267IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-28209267IPR001471AP2/ERF domain
PRINTSPR003671.0E-8210221IPR001471AP2/ERF domain
PRINTSPR003671.0E-8233249IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEFPSPQIQY PNFSFFQDQL PLSWNDQLFL DEHFSNYPWE VDSVDQSDNH QLPRSSSFSD  60
TYSSKGCYEW KVDSVDQSDD RQLPRSSSFP ETNSSKGCYA WKVDSVDQRS SFSDTNSSKG  120
CYAWKVDSVD QSDDHQLPRS SSFSDTNSSK GNYPLQTIDS SSQEDNDHQL LRSSSFSDTN  180
SSKESNNHDI EEVTSSHDSN PTRSNEKKHY IGVRKRPWGK YAAEIRDSTR NGIRVWLGTF  240
NTGEEAALAY DQAALTMRGP LALLNFPINK VRESLENINY FCEDXCVKHR RNRKKGIKEN  300
NNNNNNNNVL VLEDLGVELL DELLMSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-27208268161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754433e-71HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755163e-71HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016574513.10.0PREDICTED: ethylene-responsive transcription factor 1B-like
TrEMBLA0A2G2ZFL10.0A0A2G2ZFL1_CAPAN; Ethylene-responsive transcription factor 15
STRINGPGSC0003DMT4000607321e-101(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-35ethylene response factor 1