PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g21690
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family E2F/DP
Protein Properties Length: 340aa    MW: 37847.8 Da    PI: 6.1229
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g21690genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP82.14.8e-2679144171
     E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                 r+++sL+llt+kf++ll+++++g+++ln+ a+ L   +v   +RRiYDi+NVLe+++liek+ k++irwkg
  CA04g21690  79 RYDNSLGLLTKKFINLLQEADDGTLDLNHSADVL---EV--AKRRIYDITNVLEGIGLIEKTTKSHIRWKG 144
                 689*******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.04E-1679142IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.5E-2679145IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.2E-3179144IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023199.3E-2481144IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146608.62E-35155260No hitNo description
SuperFamilySSF1440748.37E-23156260No hitNo description
PfamPF164213.9E-22160258IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEFFHCLKQK NEIEKPGEYN CVYGAGKKSL AVNYSPLKQA TSARTKQPSK GKVSRDAVSA  60
AKGVNADLLD NLNLGGHYRY DNSLGLLTKK FINLLQEADD GTLDLNHSAD VLEVAKRRIY  120
DITNVLEGIG LIEKTTKSHI RWKGFRSTKS RGLDNQVSRL KGEIAYLNAE DCRLDNCIRE  180
KLEQIRTLES DMDSQKSLFL TEEDIMSLPR FRDKTVIAIK APYASSIEVP DPCEDLDLES  240
QYRLVLRSTT APIDLFLLSK PGRQHEDLTI KHEKPLDALS AAEKTDDAYL SSVRPCSLDS  300
TASKLSGVHK IVPSHASVDD DYWLLSEEEV SATALWGAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A3e-2375145374PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016571412.10.0PREDICTED: transcription factor E2FC
TrEMBLA0A1U8GJE90.0A0A1U8GJE9_CAPAN; transcription factor E2FC
TrEMBLA0A2G2ZSI40.0A0A2G2ZSI4_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000096820.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA126252022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.24e-79E2F/DP family protein