PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g20780
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 93aa    MW: 10632 Da    PI: 9.0438
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g20780genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.49e-10347345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+   +++ +a +++  +   +W+ Iar++g g+++ +++ ++ 
       CA04g20780  3 SWTARQNKKFEEALALYDRDtpdRWHNIARCVG-GKSAAEVRRHYE 47
                     6*****************99*************.**********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.6E-6152IPR001005SANT/Myb domain
PROSITE profilePS5129311.702154IPR017884SANT domain
PfamPF002493.4E-7347IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-5355IPR009057Homeodomain-like
CDDcd001676.15E-8350No hitNo description
SuperFamilySSF466891.14E-12356IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MASWTARQNK KFEEALALYD RDTPDRWHNI ARCVGGKSAA EVRRHYELLV TEIMQIENGQ  60
VPLPNYKAAE NNNRGYANEL RYPKSLLSIQ PN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-264721179RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4578113e-68CU457811.8 S.lycopersicum DNA sequence from clone LE_HBa-132M8 on chromosome 4, complete sequence.
GenBankCU4682393e-68CU468239.4 S.lycopersicum DNA sequence from clone SL_MboI-124K5 on chromosome 4, complete sequence.
GenBankHG9755163e-68HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016568545.14e-56PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1732e-32RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2G2ZSA11e-62A0A2G2ZSA1_CAPAN; Protein RADIALIS-like 6
STRINGSolyc04g080500.2.13e-48(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.16e-35RAD-like 6