PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g19570
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family G2-like
Protein Properties Length: 204aa    MW: 22905.9 Da    PI: 10.1255
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g19570genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.42.8e-32133186255
     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  CA04g19570 133 PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 186
                 9****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.78E-16130187IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.6E-29131187IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-24133186IPR006447Myb domain, plants
PfamPF002492.4E-7134185IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MRDTVLSMVP DLSLQISLPS CISKSDQFKE AIRFDSTTDS GSSASVGSDL SHENNGYFHL  60
DKIKPFNLPL VPSYEPTLSL GFGQVPTGTN VHHHNHHHHQ HQYQHYQPQI YGRDFKRSSR  120
MNISGVKRTA RAPRMRWTST LHAHFVHAVQ LLGGHERATP KSVLELMNVK DLTLAHVKSH  180
LQMYRTVKST DKATGNIFGI FIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-17134188458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-17134188458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-17134188458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-17134188458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-17134188458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-17134188458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-17134188458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-17134188458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:19054366, ECO:0000269|PubMed:20444210}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2719896e-65KP271989.1 UNVERIFIED: Populus trichocarpa isolate Potri.014G037200_BESC-125 mRNA sequence.
GenBankKP2719906e-65KP271990.1 UNVERIFIED: Populus trichocarpa isolate Potri.014G037200_BESC-293 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016571454.11e-143PREDICTED: probable transcription factor KAN4
SwissprotQ9FJV58e-55KAN4_ARATH; Probable transcription factor KAN4
TrEMBLA0A1U8GTK61e-141A0A1U8GTK6_CAPAN; probable transcription factor KAN4
TrEMBLA0A2G2ZRW61e-141A0A2G2ZRW6_CAPAN; Putative transcription factor KAN4
STRINGPGSC0003DMT4000305188e-99(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122621822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.21e-50G2-like family protein
Publications ? help Back to Top
  1. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  2. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  3. Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA
    Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS.
    Plant Physiol., 2016. 172(4): p. 2403-2415
    [PMID:27794102]