PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g17930
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 173aa    MW: 18866.3 Da    PI: 8.0454
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g17930genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.62.3e-292103197
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C++lrr+C+++C+l+ ++     p +q +++ +v k+FG+s ++++++a+p+++r+++++sl++eA+ r+ +Pv G+vg++++++++++q+++++
  CA04g17930   2 SCNGCRILRRRCSDNCTLRACLdgiddPRAQGNATLFVSKFFGRSDLMSFISAVPQNRRPALFKSLLFEACGRTVNPVTGVVGLLTTGNWHVCQKAVQT 100
                 6*************************99*******************************************************************9998 PP

      DUF260  95 all 97 
                 +l+
  CA04g17930 101 VLA 103
                 876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.1821107IPR004883Lateral organ boundaries, LOB
PfamPF031957.7E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MSCNGCRILR RRCSDNCTLR ACLDGIDDPR AQGNATLFVS KFFGRSDLMS FISAVPQNRR  60
PALFKSLLFE ACGRTVNPVT GVVGLLTTGN WHVCQKAVQT VLAGGNPLSY GGTWDIPSQF  120
SNESGSDHVD TTEWIGSRKR RRTTSSFGSE TELSELDSVK GEEEPKLLNL FV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137141RKRRR
2137142RKRRRT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755163e-57HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016571485.11e-123PREDICTED: LOB domain-containing protein 38-like
SwissprotQ9SN233e-52LBD38_ARATH; LOB domain-containing protein 38
TrEMBLM1BXU35e-91M1BXU3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000553932e-90(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-53LOB domain-containing protein 38